Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,712,102:1 +T 5.0% coding (334/2115 nt) PP_4171 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,712,1021.T 5.0% 332.8 / 11.9 80coding (334/2115 nt)PP_4171hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (40/36);  new base T (2/2);  total (42/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.73e-01

CCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCAC  >  NC_002947/4711959‑4712250
                                                                                                                                                |                                                                                                                                                    
ccAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCg                                                                                                                                                 <  8:52200/149‑1 (MQ=255)
ccAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCg                                                                                                                                                 >  7:136442/1‑149 (MQ=255)
 catcGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCgg                                                                                                                                                <  7:292946/146‑1 (MQ=255)
  aGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGt                                                                                                                                               <  7:241853/149‑1 (MQ=255)
   gCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACCTCTACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGta                                                                                                                                              <  1:258484/149‑1 (MQ=255)
                 aTCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCTGCGCGGTATACCgagcggcca                                                                                                                                 >  6:113486/1‑144 (MQ=255)
                 aTCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCTGCGCGGTATACCgagcggcca                                                                                                                                 >  5:366726/1‑144 (MQ=255)
                 aTCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCt                                                                                                                                >  6:420606/1‑149 (MQ=255)
                  tCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCTGCGCGGTATACCgagcggccat                                                                                                                                <  6:366726/149‑7 (MQ=255)
                    cccGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCTGCGCGGTATACCgagcggccatc                                                                                                                               <  5:113486/148‑8 (MQ=255)
                    cccGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGc                                                                                                                             >  5:123951/1‑149 (MQ=255)
                        aaCTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACg                                                                                                                         >  6:252205/1‑149 (MQ=255)
                         aCTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACgg                                                                                                                        <  8:136442/149‑1 (MQ=255)
                         aCTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACgg                                                                                                                        >  5:316214/1‑149 (MQ=255)
                             ctgcGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCt                                                                                                                                >  5:146608/1‑137 (MQ=255)
                             ctgcGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCt                                                                                                                                <  6:146608/137‑1 (MQ=255)
                             ctgcGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTg                                                                                                                      <  5:252205/147‑1 (MQ=255)
                               gcgcCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGCCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACt                                                                                                                  >  5:177450/1‑149 (MQ=255)
                                 gcCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGc                                                                                                                             >  7:327403/1‑136 (MQ=255)
                                 gcCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGc                                                                                                                             <  8:327403/136‑1 (MQ=255)
                                  ccTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGACACGGTGGACTg                                                                                                                 >  5:130910/1‑147 (MQ=255)
                                   cTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAg                                                                                                              >  3:356878/1‑149 (MQ=255)
                                       tACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGt                                                                                                                       >  1:301281/1‑136 (MQ=255)
                                       tACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGt                                                                                                                       <  2:301281/136‑1 (MQ=255)
                                        aCCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTc                                                                                                                                                  <  3:52480/108‑1 (MQ=255)
                                        aCCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTc                                                                                                                                                  >  4:52480/1‑108 (MQ=255)
                                         ccGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACAt                                                                                                        >  5:370811/1‑149 (MQ=255)
                                           gggCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCG‑GCTGGGTATACCGCGCAGGCCTGGCCTCGGTGGACTGGAGCGACATcc                                                                                                      <  2:279184/149‑1 (MQ=255)
                                               atgatgATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCtt                                                                                                  >  3:79413/1‑149 (MQ=255)
                                                tgatgaTCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTg                                                                                                 <  1:412444/149‑1 (MQ=255)
                                                tgatgaTCGGCTACGGTGCCGGTAATCAACCCACGGCCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTg                                                                                                 <  6:177450/149‑1 (MQ=255)
                                                 gatgatCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGt                                                                                                                       >  1:401396/1‑126 (MQ=255)
                                                 gatgatCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGt                                                                                                                       <  2:401396/126‑1 (MQ=255)
                                                     atCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCAt                                                                                            >  2:267610/1‑149 (MQ=255)
                                                          cTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATggag                                                                                        >  6:402282/1‑148 (MQ=255)
                                                            aCGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATccc                                                                                                     >  5:182156/1‑133 (MQ=255)
                                                            aCGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATccc                                                                                                     <  6:182156/133‑1 (MQ=255)
                                                              ggTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGatat                                                                                   >  4:310776/1‑149 (MQ=255)
                                                                  ccGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAg                                                                               <  6:130910/149‑1 (MQ=255)
                                                                   cGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAgc                                                                              <  4:79413/149‑1 (MQ=255)
                                                                   cGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAgc                                                                              >  8:133142/1‑149 (MQ=255)
                                                                     gTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAgcg                                                                             >  5:368757/1‑148 (MQ=255)
                                                                           aaCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAg                                                                      >  6:271887/1‑149 (MQ=255)
                                                                           aaCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAg                                                                      <  6:370811/149‑1 (MQ=255)
                                                                            aCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCt                                                                                                   <  3:199838/119‑1 (MQ=255)
                                                                            aCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCt                                                                                                   >  4:199838/1‑119 (MQ=255)
                                                                            aCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAgg                                                                     >  7:115277/1‑149 (MQ=255)
                                                                            aCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAgg                                                                     >  7:358450/1‑149 (MQ=255)
                                                                             ccccCGGTCAACTACCCCGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGgt                                                                    <  7:298628/149‑1 (MQ=255)
                                                                             cccACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGgt                                                                    >  3:334667/1‑149 (MQ=255)
                                                                                aCGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGtt                                                                 >  7:101997/1‑149 (MQ=255)
                                                                                   gTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCg                                                              >  4:140855/1‑149 (MQ=255)
                                                                                      aaCTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTg                                                            <  5:420606/148‑1 (MQ=255)
                                                                                        cTACCACGGCAGCAACGTCAACGTCGCACGGCGCTTGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGGGCAGGCCTGGCCACGGTGGACTGGAGCGAGATCCCCTTGGCCATGGAGGATATCGAGCGCAGCGAGGTGTTTCGTGGcc                                                         <  7:374814/149‑1 (MQ=255)
                                                                                        cTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGcc                                                         <  8:101997/149‑1 (MQ=255)
                                                                                         tACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATc                                                                                                       >  6:320326/1‑102 (MQ=255)
                                                                                         tACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATc                                                                                                       <  5:320326/102‑1 (MQ=255)
                                                                                           ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTg                                                                                                 >  8:194821/1‑106 (MQ=255)
                                                                                           ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTg                                                                                                 <  7:194821/106‑1 (MQ=255)
                                                                                             aCGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACAt                                                                                                        >  1:133604/1‑97 (MQ=255)
                                                                                             aCGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACAt                                                                                                        <  2:133604/97‑1 (MQ=255)
                                                                                                   gcaACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGt                                               >  8:120151/1‑148 (MQ=255)
                                                                                                    caACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGt                                               >  6:59206/1‑147 (MQ=255)
                                                                                                    caACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGt                                               >  6:53114/1‑147 (MQ=255)
                                                                                                       cGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGc                                           >  3:6873/1‑148 (MQ=255)
                                                                                                        gTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAg                                                                      <  7:71982/120‑1 (MQ=255)
                                                                                                        gTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAg                                                                      >  8:71982/1‑120 (MQ=255)
                                                                                                             cgacgCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGgcg                                    <  3:310776/149‑1 (MQ=255)
                                                                                                                 gCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCaa                                <  7:120151/149‑1 (MQ=255)
                                                                                                                        gcATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTg                         <  5:59206/149‑1 (MQ=255)
                                                                                                                        gcATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTg                         <  5:53114/149‑1 (MQ=255)
                                                                                                                          aTGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCACAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGAt                       >  6:255723/1‑149 (MQ=255)
                                                                                                                           tGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATg                      <  8:358450/149‑1 (MQ=255)
                                                                                                                            gCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAgc                                                                              >  6:422317/1‑92 (MQ=255)
                                                                                                                            gCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAgc                                                                              <  5:422317/92‑1 (MQ=255)
                                                                                                                              aGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCg                   <  6:316214/149‑1 (MQ=255)
                                                                                                                                   ttGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCggtggt              <  6:368757/149‑1 (MQ=255)
                                                                                                                                      aTCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCaa           <  7:133142/149‑1 (MQ=255)
                                                                                                                                      aTCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCaa           >  1:261117/1‑149 (MQ=255)
                                                                                                                                             gCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTc    >  3:254983/1‑149 (MQ=255)
                                                                                                                                               c‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCAc  >  8:159636/1‑149 (MQ=255)
                                                                                                                                               c‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCAc  <  4:356878/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
CCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCC‑GCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCAC  >  NC_002947/4711959‑4712250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑