Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,608,293:1 +A 8.3% intergenic (‑155/+33) cyaB ← / ← waaA cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,608,2931.A 8.3% 233.5 / 15.2 60intergenic (‑155/+33)cyaB/waaAcyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
Reads supporting (aligned to +/- strand):  ref base . (26/29);  new base A (3/2);  total (29/31)
Fisher's exact test for biased strand distribution p-value = 6.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.62e-01

AACGTCCCACAAGCTTCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCGGCAGT  >  NC_002947/5608146‑5608434
                                                                                                                                                    |                                                                                                                                              
gaagtgtcacaCGCTTGCGTCGGAAGCTTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCActc                                                                                                                                                 >  8:309809/8‑148 (MQ=255)
 aCGTCCCACAAGCTTCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCActct                                                                                                                                               >  8:191783/1‑148 (MQ=255)
  agtgtcacaCGCTTGCGTCGGAAGCTTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTa                                                                                                                                             <  7:309809/143‑1 (MQ=255)
       cacaAGCTTCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCgg                                                                                                                                       <  8:74059/149‑1 (MQ=255)
        acaAGCTTCCGACGCAAGCGTCTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACAAGAATCAGACATAACCACTCTAGACCgg                                                                                                                                       >  4:80585/1‑148 (MQ=255)
           aGCTTCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCt                                                                                                                                   <  2:38580/149‑1 (MQ=255)
             cTTCCGACTCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCGAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATATCCAGAATCAGAGATATCCACTCTAGACCGGGTCttt                                                                                                                                 <  8:48313/149‑1 (MQ=255)
             cTTCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGGCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCttt                                                                                                                                 <  6:306047/149‑1 (MQ=255)
              ttCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCttt                                                                                                                                 >  1:166727/1‑148 (MQ=255)
               tCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCttt                                                                                                                                 >  2:190997/1‑147 (MQ=255)
                ccGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTg                                                                                                                                <  3:177561/147‑1 (MQ=255)
                 cGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAg                                                                                                                              <  1:190997/148‑1 (MQ=255)
                 cGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGt                                                                                                                             <  2:166727/149‑1 (MQ=255)
                 cGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGt                                                                                                                             >  6:311488/1‑149 (MQ=255)
                 cGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGACGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGt                                                                                                                             >  7:156262/1‑149 (MQ=255)
                       aaGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCAAAGACCCGGTCTAGAGTGGatat                                                                                                                       <  7:84444/149‑1 (MQ=39)
                       aaGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGt                                                                                                                                     >  7:201263/1‑135 (MQ=255)
                       aaGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGt                                                                                                                                     <  8:201263/135‑1 (MQ=255)
                       aaGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGt                                                                                                                             >  4:23454/1‑143 (MQ=255)
                       aaGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGt                                                                                                                             <  3:23454/143‑1 (MQ=255)
                           gtttgACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTTAGGGCGAGAAATGCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCg                                                                                                                   <  6:278385/146‑1 (MQ=255)
                                            tttAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAg                                                                                                  >  1:398618/1‑149 (MQ=255)
                                              tAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAgg                                                                                                 <  7:191783/148‑1 (MQ=255)
                                                aaGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCAAAGACCCGGTCTAGAGTGGATATGTctga                                                                                                                 >  3:89807/1‑127 (MQ=37)
                                                aaGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCAAAGACCCGGTCTAGAGTGGATATGTctga                                                                                                                 <  4:89807/130‑4 (MQ=37)
                                                          gTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTc                                                                                    <  8:156262/149‑1 (MQ=255)
                                                           tAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTc                                                                                    >  2:58672/1‑148 (MQ=255)
                                                             ggAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGa                                                                                  <  1:58672/148‑1 (MQ=255)
                                                             ggAAGTTTCCTAACGGAGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAAGCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGTATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGa                                                                                  <  3:80585/148‑1 (MQ=255)
                                                                        aaCGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGc                                                                       >  1:349284/1‑148 (MQ=255)
                                                                                gaAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGccccc                                                              <  2:398618/149‑1 (MQ=255)
                                                                                    tCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGAt                                                          >  1:72456/1‑149 (MQ=255)
                                                                                    tCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGAt                                                          <  5:311488/149‑1 (MQ=255)
                                                                                       aGTGTAGGAAGATACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTgg                                                       <  5:150872/149‑1 (MQ=255)
                                                                                           tAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCAACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCACCAGACCCTCGAGCAATCGCTGCAAAGCCACATGATTGGCCCg                                                   >  2:197972/1‑149 (MQ=255)
                                                                                              gAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGAAGATAGCCCCCAGACCATAGAGCAATCGCTGCAAAGCCCCCGGATTGGCCCGCAt                                                >  1:338106/1‑149 (MQ=255)
                                                                                               aaGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATc                                               <  7:287777/149‑1 (MQ=255)
                                                                                                  ttACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGTGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGa                                                                                         <  8:240297/104‑1 (MQ=255)
                                                                                                  ttACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGa                                                                                         >  7:240297/1‑104 (MQ=255)
                                                                                                  ttACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGCTCTTTGAGTGGATATGTCGGTTATCAGCGCATCAACGCCCCCAGa                                                                                         >  7:246689/1‑104 (MQ=255)
                                                                                                        cTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGCCACTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTg                                      >  5:41458/1‑149 (MQ=255)
                                                                                                         ttACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGcc                                         >  5:43947/1‑145 (MQ=255)
                                                                                                         ttACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGcc                                         <  6:43947/145‑1 (MQ=255)
                                                                                                           aCGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGcc                                    <  1:197972/148‑1 (MQ=255)
                                                                                                           aCGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGc                                     <  2:349284/147‑1 (MQ=255)
                                                                                                             gCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGGGGATCAAGGCGCCCAGGCCCTCGAGCAATCGCTGGCAAGCCCCCTGAGAGGCCCGCATCCCGgcccggcccga                                 >  6:224777/1‑148 (MQ=255)
                                                                                                                    gAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCAc                            <  6:70151/147‑1 (MQ=255)
                                                                                                                    gAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCAc                            >  5:70151/1‑147 (MQ=255)
                                                                                                                       taaataaCCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATg                       >  4:66368/1‑149 (MQ=255)
                                                                                                                          ataaCCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGa                                                                                  <  6:414767/87‑1 (MQ=255)
                                                                                                                          ataaCCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGa                                                                                  >  5:414767/1‑87 (MQ=255)
                                                                                                                             aCCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTTGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTgg                 <  5:224777/149‑1 (MQ=255)
                                                                                                                                aGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGc                                                                                >  4:336599/1‑83 (MQ=255)
                                                                                                                                aGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGc                                                                                <  3:336599/83‑1 (MQ=255)
                                                                                                                                      cgACATATCCACTCAAAGACCCGGTCTAGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGc        >  4:153161/2‑149 (MQ=38)
                                                                                                                                       gACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCg       >  4:320993/1‑149 (MQ=255)
                                                                                                                                       gACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCg       >  2:412985/1‑149 (MQ=255)
                                                                                                                                        aCATATCCACTCAAAGACCCGGTCTAGAGTGGAATTGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCATAGCCCACTGATAGGCCCCCATCACCGCCCTGCCCGCCACACCCAAGCGCTGCGCGTCCAGCgg      >  1:262760/1‑149 (MQ=255)
                                                                                                                                             tCCACTCAAAGACCCGGTCTAGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCg       <  6:98311/143‑1 (MQ=39)
                                                                                                                                             tCCACTCAAAGACCCGGTCTAGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCg       >  5:98311/1‑143 (MQ=39)
                                                                                                                                              ccACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCGGCAGt  >  4:401038/1‑147 (MQ=255)
                                                                                                                                              ccACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCGGCAGt  <  3:401038/147‑1 (MQ=255)
                                                                                                                                                  tctAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCgg      <  1:339721/139‑1 (MQ=255)
                                                                                                                                                  tctAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCgg      >  2:339721/1‑139 (MQ=255)
                                                                                                                                                    |                                                                                                                                              
AACGTCCCACAAGCTTCCGACGCAAGCGTGTGACACTTCTGACTTTTAAAGTCTATTCGTAGGAAGTTTCCTAACGGCGAGAAATCCAGTGTAGGAAGTTACAACTTACGCCGTAGGAATAAATAACCAGAATCAGACATATCCACTCTAGACCGGGTCTTTGAGTGGATATGTCGGTTATCAGCGGATCAAGGCCCCCAGACCCTCGAGCAATCGCTGCAAAGCCCCCTGATTGGCCCGCATCACCGCCCTGCCCGCCTCACCCATGCGCTGGGCGTCCTGCGGCAGT  >  NC_002947/5608146‑5608434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: