Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,385,797:1 | +A | 7.1% | coding (81/576 nt) | PP_2093 ← | two‑component system response regulator NasT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,385,797 | 1 | . | A | 7.1% | 221.8 / 10.2 | 56 | coding (81/576 nt) | PP_2093 | two‑component system response regulator NasT |
Reads supporting (aligned to +/- strand): ref base . (24/28); new base A (2/2); total (26/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 |
GATGGGCCGCGGCTGGTCACGGCTGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCATGCAAGCTGAAA > NC_002947/2385650‑2385940 | gATGGGCCGCGGCTGGTCACGGCTGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAt‑c‑t > 7:157243/1‑149 (MQ=255) gCCGCGGCTGGTCACGGCTGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGA‑GAT‑CATCGAAg < 7:147192/149‑1 (MQ=255) gCCGCGGCTGGTCACGGCTGACCAGCACTACCTGTTACATCACATCGCGGTCTGGCGAGTCGGTATCGATAAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAg > 7:258712/1‑149 (MQ=255) gcgGCTGGTCACGGCTGCCCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCg > 5:337555/1‑149 (MQ=255) cgGCTGGTCACGGCTGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCgg < 8:293651/149‑1 (MQ=255) ggCTGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAAc < 7:339772/149‑1 (MQ=255) cTGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAG‑C‑TCGACGCCGGCCTCACGCACCGc > 6:115496/1‑149 (MQ=255) tGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACg > 2:43235/1‑147 (MQ=255) aCCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAg < 4:329361/148‑1 (MQ=255) aCCAGCACTACCTGCTCCATCAGATCGCGGTCTGGCGAGTCGGAATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCa < 7:48994/147‑1 (MQ=255) cAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCg > 7:318897/1‑130 (MQ=255) cAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCg < 8:318897/130‑1 (MQ=255) gCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTc < 6:370351/149‑1 (MQ=255) tACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGc > 7:226719/1‑149 (MQ=255) ccTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAt‑c > 5:53146/1‑113 (MQ=255) ccTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAt‑c < 6:53146/113‑1 (MQ=255) ccTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGa > 2:101940/1‑149 (MQ=255) gTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAgg < 2:353482/143‑1 (MQ=255) gTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAgg > 1:353482/1‑143 (MQ=255) ttCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGAcc > 1:184879/1‑147 (MQ=255) aTCACGTCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACAAACCCCTCAGACGACAGATCtt > 6:290193/1‑149 (MQ=255) aTCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCtt < 2:253279/149‑1 (MQ=255) tCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTc < 4:263893/134‑1 (MQ=255) tCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTc > 3:263893/1‑134 (MQ=255) aTCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGctct > 6:17345/1‑149 (MQ=255) gcgGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGATCC‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTg < 1:101940/148‑1 (MQ=255) gcgGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTgg < 8:226719/148‑1 (MQ=255) tCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTgtc < 2:184879/149‑1 (MQ=255) gggCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTgtcgt < 4:283320/148‑1 (MQ=255) gTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATcagcag > 6:67168/1‑149 (MQ=255) gTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGA‑GAT‑CATCGAAGcccca > 2:410172/1‑89 (MQ=38) gTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGA‑GAT‑CATCGAAGcccca < 1:410172/92‑4 (MQ=38) gATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATgc < 8:157243/149‑1 (MQ=255) gtatccacGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCaa > 4:130028/5‑149 (MQ=255) gCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCaa > 1:41065/1‑148 (MQ=255) gCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAAc < 2:41065/149‑1 (MQ=255) accacGTCCGGGCGCACCGTTGCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCTGCCTCAGTCAACGGAGTGCTCAGGCGACTGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACAt < 5:290193/149‑1 (MQ=255) ccacGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATg > 7:42103/1‑149 (MQ=255) cacGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGc < 4:307760/109‑1 (MQ=255) cacGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGc > 3:307760/1‑109 (MQ=255) cacGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTgg < 4:290735/118‑1 (MQ=255) cacGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTgg > 3:290735/1‑118 (MQ=255) acGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGtt < 5:67168/149‑1 (MQ=255) gTCCGGGCGCACCGTTTCGACGCGGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCg > 5:227499/1‑149 (MQ=255) ggCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTcccc < 8:42103/149‑1 (MQ=255) tttCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACgcgc < 8:258712/149‑1 (MQ=255) gACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGac > 4:323582/1‑149 (MQ=255) aGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCaa < 2:347159/110‑1 (MQ=255) aGGTCGATGGTCAGGGCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCGCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGc < 6:337555/149‑1 (MQ=255) tCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTccccc < 8:79978/114‑1 (MQ=255) tCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTccccc > 7:79978/1‑114 (MQ=255) tCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGccc > 8:174854/1‑148 (MQ=255) tCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCACCGGGCAACTCGccc > 3:176959/1‑148 (MQ=255) aGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAg < 1:43235/149‑1 (MQ=255) ggccggCTTCGA‑GAT‑CATCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCAt > 7:224520/5‑149 (MQ=255) tGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCATg > 6:205841/1‑149 (MQ=255) gggCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCATGc < 3:130028/148‑1 (MQ=255) gCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCATGCAAg < 5:17345/149‑1 (MQ=255) atgat‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTGCGTCCCCCTCACGCGCCGACACGGGCAGCGGGCAACTCGCCCAAGGCATGCAAGCTGaaa < 5:115496/149‑1 (MQ=255) | GATGGGCCGCGGCTGGTCACGGCTGACCAGCACTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTCTGGGGCTTCGATGAT‑C‑TCGAAGCCGGCCTCACTCAACGCAGCCCTCAGGCGACCGAGCTTGCTCTGGGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCATGCAAGCTGAAA > NC_002947/2385650‑2385940 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |