| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 594185 = | 75 (1.170) | 4 (0.070) | 4/240 | NT | 5.4% | intergenic (‑46/+64) | oprG/PP_0505 | outer membrane protein OprG/hypothetical protein |
| ? | NC_002947 | 594217 = | 68 (1.120) | intergenic (‑78/+32) | oprG/PP_0505 | outer membrane protein OprG/hypothetical protein | |||||
AAAGATGCAGGTCAAAGCTTCCAGCAGCGAGCTGGCCGACGCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTCGTTGAGCTGGGTCAAACTTTCCGTTT‑AACCAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/594339‑594185‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagctcAACGAAGCGTCTTCACGAATTCGAAACAGTTCTCATCTCAGCTCATAAGCGTAGATTTTCTCGGCTTCCATCTGGTAGCCGGCGTCGGCCAGCTCGCTGCTGGAAGCTTTGACCTGCATCTTTCCCTCTATCCAATAGGGCTGG > NC_002947/594217‑594360 AAAGATGCAGGTCAAAGCTTCCAGCAGCGAGCTGGCCGACGCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTCGTTGAGCTGGGTCAAACTTTCCGTTT‑AAC < 8:31279/149‑1 AAGATGCAGGTCAAAGCTTCCAGCAGCGAGCTGGCCGACGCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTTGTTGAGCTGGGTCAAACTTTCCGTTT‑AACC < 1:245576/149‑1 TGCAGGTCAAAGCTTCCAGCAGCGAGCTGGCCGACGCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTCGTTGAGCTGGGTCAAACTTTCCGTTT‑AACCAGCT < 1:138775/149‑1 GCGAGCTGGCCGACGCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTCGTTGAGCT‑GGTTAAACGGAAAGTTTGACCCAGCTCAACGAAGCGTCTTCACGAAT < 1:95253/149‑1 GCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTCGTTGAGCT‑GGTTAAACGGAAAGTTTGACCCAGCTCAACGAAGCGTCTTC > 7:313793/1‑129 GCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTCGTTGAGCT‑GGTTAAACGGAAAGTTTGACCCAGCTCAACGAAGCGTCTTC < 8:313793/129‑1 CGTTGAGCTGGGTCAAACTTTCCGTTT‑AACCAGCTCAACGAAGCGTCTTCACGAATTCGAAACAGTTCTCATCTCAGCTCATAAGCGTAGATTTTCTCGGCTTCCATCTGGTAGCCGGCGTCGGCCAGCTCGCTGCTGGAAGCTTTGA < 2:95253/148‑1 CCAGCTCAACGAAGCGTCTTCACGAATTCGAAACAGTTCTCATCTCAGCTCATAAGCGTAGATTTTCTCGGCTTCCATCTGGTAGCCGGCGTCGGCCAGCTCGCTGCTGGAAGCTTTGACCTGCATCTTTCCCTCTATCCAATAGGGCT > 6:324146/1‑149 AGCTCAACGAAGCGTCTTCACGAATTCGAAACAGTTCTCATCTCAGCTCATAAGCGTAGATTTTCTCGGCTTCCATCTGGTAGCCGGCGTCGGCCAGCTCGCTGCTGGAAGCTTTGACCTGCATCTTTCCCTCTATCCAATAGGGCTGG > 3:389918/1‑149 AGCTCAACGAAGCGTCTTCACGAATTCGAAACAGTTCTCATCTCAGCTCATAAGCGTAGATTTTCTCGGCTTCCATCTGGTAGCCGGCGTCGGCCAGCTCGCTGCTGGAAGCTTTGACCTGCATCTTTCCCTCTATCCAATAGGGCTGG < 8:126292/149‑1 AAAGATGCAGGTCAAAGCTTCCAGCAGCGAGCTGGCCGACGCCGGCTACCAGATGGAAGCCGAGAAAATCTACGCTTATGAGCTGAGATGAGAACTGTTTCGAATTCGTGAAGACGCTTCGTTGAGCTGGGTCAAACTTTCCGTTT‑AACCAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/594339‑594185‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagctcAACGAAGCGTCTTCACGAATTCGAAACAGTTCTCATCTCAGCTCATAAGCGTAGATTTTCTCGGCTTCCATCTGGTAGCCGGCGTCGGCCAGCTCGCTGCTGGAAGCTTTGACCTGCATCTTTCCCTCTATCCAATAGGGCTGG > NC_002947/594217‑594360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |