| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 743020 | NA (NA) | 12 (0.200) | 11/244 | NT | NA | coding (1121/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | = 743038 | NA (NA) | coding (1139/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
TATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/742869‑743020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTGGC < NC_002947/743038‑742892 TATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGG > 7:348976/1‑149TATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGG > 4:278393/1‑149TATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGG > 3:175406/1‑149TATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGG > 2:52465/1‑149 ATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGC > 1:86110/1‑149 ATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGC > 5:25228/1‑149 ATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGC > 2:262295/1‑149 tcGGACGAGCTGGCCCCAGCAGACAAGGCGGCGCGAGGCAAGCCTGAGCCTAGACCGCTTCCGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCGCGCAAAATGCCGACTGTCCTCGAGCGGATCAACCCCGTCCTGAGAGGCT < 8:175801/147‑1 TGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCT > 3:328079/1‑149 TGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGC < 3:187521/148‑1 TGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGG < 2:93326/147‑1 GGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGTCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG < 3:199572/148‑1 GGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG < 6:155659/148‑1 GGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG < 1:188616/148‑1 GGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTCACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG < 6:74103/148‑1 CTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTG > 7:319536/1‑147 ccacgcGCAGCCTTGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCT > 2:91932/7‑137 ccacgcGCAGCCTTGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCT < 1:91932/131‑1 ACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG > 5:299066/1‑136 ACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG < 6:299066/136‑1 CCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAG < 6:56549/149‑1 AGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCT < 3:295451/149‑1 GGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCTC < 8:319536/149‑1 CTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTC < 3:307319/149‑1 CTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGC > 5:55707/1‑144 CTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGC < 6:55707/144‑1 TGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCA < 2:405772/149‑1 AGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTACGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGT < 2:6402/147‑1 AGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTACGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGT > 1:6402/1‑147 TGCTGCGCGGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCT > 4:233748/1‑94 TGCTGCGCGGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGAGCTTGAAGTAGCTAGCCCAGCCT < 3:233748/94‑1 CTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCT < 4:190014/67‑1 CTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCT > 3:190014/1‑67 GGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT > 3:44511/1‑149 GCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < 3:361243/149‑1 GCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < 7:215953/149‑1 GCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT < 8:49857/148‑1 GCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT < 2:139426/148‑1 GCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGGTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < 7:210097/149‑1 GCTGAGCTTGAAGTAGCTAGACCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG > 1:191728/1‑149 CTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTGG < 2:270138/149‑1 TGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTGGC > 8:348976/1‑149 TGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCA < 7:226637/141‑1 TGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCA > 8:226637/1‑141 TGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCT > 4:369139/1‑48 TGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCT > 4:363033/1‑48 TGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCT < 3:369139/48‑1 TGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCT < 3:363033/48‑1 TATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/742869‑743020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTGGC < NC_002947/743038‑742892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |