New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 800152	55 (0.860)	6 (0.100)	6/244	NT	9.7%	coding (321/969 nt)	ispB	octaprenyl diphosphate synthase
	?	NC_002947	= 800182	59 (0.960)					coding (291/969 nt)	ispB	octaprenyl diphosphate synthase

CTTCGGCAATCACCCGGGTGGCCTTGGACAGGA‑TCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/800040‑800152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCGTACTGGTGG  <  NC_002947/800182‑800139                                                                                                                                                                CTTCGGCAATCACCCGGGTGGCCTTGGACAGGA‑TCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCACTACGCTCTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCG           >  2:351047/1‑148     GGCAATCACCCGGGTGGCCTTGGACAGGA‑TCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCGTAC        >  5:2830/1‑147     GGCAATCACCCGGGTGGCCTTGGACAGGA‑TCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCGTAC        <  6:2830/147‑1        AATCACCCGGGTGGCCTTGGACAGGAGTCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCGTACTGG     >  1:3667/1‑148        AATCACCCGGGTGGCCTTGGACAGGA‑TCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCGTACTGG     <  2:3667/147‑1         ATCACCCGGGTGGCCTTGGACAGGA‑TCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCGTACTGGTGG  <  1:351047/149‑1                                                                                                                                                                CTTCGGCAATCACCCGGGTGGCCTTGGACAGGA‑TCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/800040‑800152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcTACCGCCAATGCCCTGTGGGGCAACGCGCCGAGCGTACTGGTGG  <  NC_002947/800182‑800139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.