| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 917702 = | 55 (0.860) | 8 (0.140) | 8/232 | NT | 13.9% | intergenic (‑136/+63) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | 917740 = | 49 (0.840) | intergenic (‑174/+25) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
CCACCGCGGCAGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917858‑917702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaa‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAG > NC_002947/917740‑917884 CCACCGCGGCAGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTC > 5:78889/1‑149 CGCGGCAGCCATTGTTATGCGTAGATCGACATCAACAGCGACAACGATGAACTGCTGGTTATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCTGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGG < 7:78488/149‑1 CGCGGCAGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGG < 8:42122/149‑1 CGGCAGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGG > 8:374208/1‑148 GATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGC < 3:263911/102‑1 GATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGC > 4:263911/1‑102 CTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGG < 5:123352/98‑1 CTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGG > 6:123352/1‑98 CCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGG < 8:21280/78‑1 CCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGG > 7:21280/1‑78 GGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCC > 5:198844/1‑149 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCG > 3:273813/1‑149 GCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGT > 8:91812/1‑149 AGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGT > 4:384416/1‑147 AGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGT < 3:384416/147‑1 TTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCA > 8:135494/1‑49 TTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCA < 7:135494/49‑1 GCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGT < 6:198844/149‑1 GTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAG > 7:306864/1‑149 CCACCGCGGCAGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917858‑917702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaa‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAG > NC_002947/917740‑917884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |