New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1229440 =	58 (0.910)	3 (0.050)	3/248	NT	5.2%	coding (2620/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	1229467 =	53 (0.850)					coding (2647/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein

CCGCTCCATGAGGTCAAGCAGATAGGCTTGTAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1229475‑1229440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGG  >  NC_002947/1229467‑1229613                                                                                                                                                                                         CCGCTCCATGAGGTCAAGCAGATAGGCTTGTAGCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGC                                    >  6:26727/1‑149        ATGAGGTCAAGCAGATAGGCTTGTAGCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGC                                                                                             >  5:267759/1‑85        ATGAGGTCAAGCAGATAGGCTTGTAGCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGC                                                                                             <  6:267759/85‑1                                   TCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGG  >  2:144561/1‑149                                   TCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGG  >  5:353151/1‑149                                   TCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCT                                                                           <  3:136665/76‑1                                   TCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCT                                                                           >  4:136665/1‑76                                                                                                                                                                                         CCGCTCCATGAGGTCAAGCAGATAGGCTTGTAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1229475‑1229440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGG  >  NC_002947/1229467‑1229613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.