| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1641732 = | 59 (0.920) | 4 (0.070) | 4/242 | NT | 6.7% | intergenic (‑42/+48) | cmoA/PP_1442 | tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA/hypothetical protein |
| ? | NC_002947 | 1641764 = | 56 (0.920) | intergenic (‑74/+16) | cmoA/PP_1442 | tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA/hypothetical protein | |||||
CCCGCGCTACGGGCGAAGGGAACCTGGTGTTGGTCTACCAGCAACCCTGGGCCCCGGAAGTGCGCCCGGTGCAGACCTTCGATTGCGCCATTCGGGTCAATTGAACGCAAAGCGCTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1641883‑1641732‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggctGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGACCAACACCAGGTTCCCTTCGCCCGTAGCGCGGGCCTGGAAGCGCCAGGTCGATAGGCCC > NC_002947/1641764‑1641909 CCCGCGCTACGGGCGAAGGGAACCTGGTGTTGGTCTACCAGCAACCCTGGGCCCCGGAAGTGCGCCCGGTGCAGACCTTCGATTGCGCCATTCGGGTCAATTGAACGCAAAGCGCTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTG < 4:292485/149‑1CCCGCGCTACGGGCGAAGGGAACCTGGTGCTGGTCTACCAGCAACCCTGGGCCCCGGAAGTGCGCCCGGTGCAGACCTTCGATTGCGCCATTCGGGTCAATTGAACGCAAAGCGCTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTG > 4:168534/1‑149 CGCGCTACGGGCGAAGGGAACCTGGTGTTGGTCTACCAGCAACCCTGGGCCCCGGAAGTGCGCCCGGTGCAGACCTTCGATTGCGCCATTCGGGTCAATTGAACGCAAAGCGCTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTGGC < 8:26055/149‑1 GCGCTACGGGCGAAGGGAACCTGGTGTTGGTCTACCAGCAACCCTGGGCCCCGGAAGTGCGCCCGGTGCAGACCTTCGATTGCGCCATTCGGGTCAATTGAACGCAAAGCGCTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTGGCT < 7:292111/149‑1 CTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTGGCTGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGACC > 1:323832/1‑127 CTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTGGCTGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGACC < 2:323832/127‑1 TCAGCCAACCATGCATCCCGGCTGCGGTTTGGCTGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGA < 1:194500/121‑1 TCAGCCAACCATGCATCCCGGCTGCGGTTTGGCTGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGA > 2:194500/1‑121 GCTGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGACCAACACCAGGTTCCCTTCGCCCGTAGCGCGGGCCTGGAAGCGCCAGGTCGATAGGCCC < 8:171734/149‑1 GCTGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGACCAACACCAGGTTCCCTTCGCCCGTAGCGCGGGCCTGGAAGCGCCAGGTCGATAGGC < 1:311014/147‑1 GCTGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGACCAACACCAGGTTCCCTTCGCCCGTAGCGCGGGCCTGGAAGCGCCAGGTCGATAGGC > 2:311014/1‑147 CCCGCGCTACGGGCGAAGGGAACCTGGTGTTGGTCTACCAGCAACCCTGGGCCCCGGAAGTGCGCCCGGTGCAGACCTTCGATTGCGCCATTCGGGTCAATTGAACGCAAAGCGCTGGTCAGCCAACCATGCATCCCGGCTGCGGTTTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1641883‑1641732‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggctGACCAGCGCTTTGCGTTCAATTGACCCGAATGGCGCAATCGAAGGTCTGCACCGGGCGCACTTCCGGGGCCCAGGGTTGCTGGTAGACCAACACCAGGTTCCCTTCGCCCGTAGCGCGGGCCTGGAAGCGCCAGGTCGATAGGCCC > NC_002947/1641764‑1641909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |