New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1664220 =	52 (0.810)	3 (0.050)	3/246	NT	5.5%	coding (171/1299 nt)	yhjE	metabolite transport protein YhjE
	?	NC_002947	1664260 =	52 (0.840)					coding (131/1299 nt)	yhjE	metabolite transport protein YhjE

CCAAGCGCCTGCCGCGCCAGTCAACTCGCCTGCGCGGGTAGCCACTGCCAGCTTCATCGGCACCGCCATCGAGTTCTATGATTTCTACGTCTACGCCACCGCCGCAGCCTTGGTGATCGGCCCGGTGTTCTTCCCGTCCGGGTCGGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1664370‑1664220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCTGACA  >  NC_002947/1664260‑1664407                                                                                                                                                                                                                                                                                                             CCAAGCGCCTGCCGCGCCAGTCAACTCGCCTGTGCGGGTAGCCACTGCCAGCTTCATCGGCACCGCCATCGAGTTCTATGATTTCTACGTCTACGCCACCGCCGCAGCCTTGGTGATCGGCCCGGTGTTCTTCCCGTCCGGGTCGGGCA                                                                                                                                                        >  6:121745/1‑149                                                                                                             CTTGGTGATCGGCCCGGTGTTCTTCCCGTCAGGGTCGGGCACCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCG                                            >  1:245290/1‑149                                                                                                                 GTGATCGGCCCGGTGTTCTTCCCGTCCGGGTCGGGCACCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCC                                                                          <  3:282698/115‑1                                                                                                                 GTGATCGGCCAGGTGTTCTTCCCGTCCGGGTCGGGCACCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCC                                                                          >  4:282698/1‑115                                                                                                                                                     ACCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCTGA    >  1:360532/1‑149                                                                                                                                                      CCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCTGA    >  8:204380/1‑148                                                                                                                                                      CCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCTGA    >  8:27600/1‑148                                                                                                                                                      CCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCT      <  5:142652/146‑1                                                                                                                                                      CCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCT      >  6:142652/1‑146                                                                                                                                                      CCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGCCTACCCGCGCAGGCGAGTTGACTGTCGCGGCAGGCGCTTGG                                       >  3:361933/1‑113                                                                                                                                                       CAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCTGACA  <  1:262078/149‑1                                                                                                                                                       CAAGGCTCCGGCGCTGCCGTAGACGTACAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGACATTGAGGAGCTCCATGA    >  8:290889/1‑147                                                                                                                                                                                                                                                                                                             CCAAGCGCCTGCCGCGCCAGTCAACTCGCCTGCGCGGGTAGCCACTGCCAGCTTCATCGGCACCGCCATCGAGTTCTATGATTTCTACGTCTACGCCACCGCCGCAGCCTTGGTGATCGGCCCGGTGTTCTTCCCGTCCGGGTCGGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1664370‑1664220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCATTGAGGAGGTCCCTGACA  >  NC_002947/1664260‑1664407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.