New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1819292	69 (1.080)	4 (0.070)	4/234	NT	5.7%	coding (537/1008 nt)	rpoS	RNA polymerase sigma S factor
	?	NC_002947	= 1819337	70 (1.190)					coding (582/1008 nt)	rpoS	RNA polymerase sigma S factor

GAGGGCAACCTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1819137‑1819292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggtcaagTTTCTGCGTCAGCTCGCGCGCGGCGCGCAGGTAGACGTTCAGTTCCTTGACCACGTGGATCGGCAGGCGAATGGTGCGGGTCTGGTTCATGATCGCCCGTTCGATGGTCTGGCGAATCCACCAGGTCGCATAGGTCGAAAAACGGAAA  <  NC_002947/1819337‑1819190                                                                                                                                                                                                                                                                                                                  GAGGGCAACCTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGT                                                                                                                                                             <  4:247336/149‑1  AGGGCAACCTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTGTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTG                                                                                                                                                            <  3:247974/149‑1    GGCAACCTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGG                                                                                                                                                           <  6:58613/148‑1       AACCTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTC                                                                                                                                                         >  6:296753/1‑147        ACCTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTCAAG                                                                                                                                                      <  8:285456/149‑1          CTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGG                                                                                                                                                           <  1:151058/142‑1          CTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGG                                                                                                                                                           >  2:151058/1‑142                               GAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTCAAGTTTCTGCGTCAGCTCGCGCGCGG                                                                                                                               >  5:53408/1‑149                                                   TGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTG                                                                                                                                                            >  3:238795/1‑100                                                   TGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTG                                                                                                                                                            <  4:238795/100‑1                                                                 CGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTCAAGTTTCTGCGTCAGCTCGCGCGCGGCGCGCAGGTAGACGTTCAGTTCCTTGACCACGT                                                                                              <  6:53408/148‑1                                                                                         GCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTCAAGTTTCTGCGTCAGCTCGCGCGCGGCGCGCAGGTAGACGTTCAGTTCCTTGACCACGTGGATC                                                                                         <  3:189992/129‑1                                                                                         GCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTCAAGTTTCTGCGTCAGCTCGCGCGCGGCGCGCAGGTAGACGTTCAGTTCCTTGACCACGTGGATC                                                                                         >  4:189992/1‑129                                                                                                                                                          AAGTTTCTGCGTCAGCTCGCGCGCGGCGCGCAGGTAGACGTTCAGTTCCTTGACCACGTGGATCGGCAGGCGAATGGTGCGGGTCTGGTTCATGATCGCCCGTTCGATGGTCTGGCGAATCCACCAGGTCGCATAGGTCGAAAAACGG     >  7:336887/1‑148                                                                                                                                                            GTTTCTGCGTCAGCTCGCGCGCGGCGCGCAGGTAGACGTTCAGTTCCTTGACCACGTGGATCGGCAGGCGAATGGTGCGGGTCTGGTTCATGATCGCCCGTTCGATGGTCTGGCGAATCCACCAGGTCGCATAGGTCGAAAAACGGAAA  >  3:289332/1‑149                                                                                                                                                                                                                                                                                                                  GAGGGCAACCTGGGGCTGATCCGGGCGGTCGAGAAGTTCGACCCGGAGCGTGGTTTCCGTTTTTCGACCTATGCGACCTGGTGGATTCGCCAGACCATCGAACGGGCGATCATGAACCAGACCCGCACCATTCGCCTGCCGATCCACGTGGTCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1819137‑1819292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggtcaagTTTCTGCGTCAGCTCGCGCGCGGCGCGCAGGTAGACGTTCAGTTCCTTGACCACGTGGATCGGCAGGCGAATGGTGCGGGTCTGGTTCATGATCGCCCGTTCGATGGTCTGGCGAATCCACCAGGTCGCATAGGTCGAAAAACGGAAA  <  NC_002947/1819337‑1819190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.