New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2660031 =70 (1.090)6 (0.100) 5/236 NT 8.4% coding (305/1536 nt) PP_2331 membrane protein
?NC_002947 2660069 = 65 (1.090)coding (267/1536 nt) PP_2331 membrane protein

GTTCGTGGCCAGCAGCAAGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2660186‑2660031
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcacgGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGTTCCACAGGT  >  NC_002947/2660069‑2660214
                                                                                                                                                                                                                                                                                                              
GTTCGTGGCCAGCAGCAAGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGGT                                                                                                                                                           <  6:419756/149‑1
 TTCGTGGCCAGCAGCAAGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGGTC                                                                                                                                                          <  7:186335/149‑1
    GTGGCCAGCAGCAAGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGC                                                                                                                                                       <  4:48239/149‑1
       GCCAGCAGCAAGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGCACG                                                                                                                                                    >  3:366355/1‑149
                 AGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGG                                                                                                                                                            <  6:240838/131‑1
                 AGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGG                                                                                                                                                            >  5:240838/1‑131
                                                                                                                    ACCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCC                                                <  3:77833/140‑1
                                                                                                                    ACCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCC                                                >  4:77833/1‑140
                                                                                                                     CCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGG                                      >  2:27627/1‑149
                                                                                                                     CCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGG                                      >  3:404436/1‑149
                                                                                                                            GACGGCAACCGCAAGGTTACC‑‑GTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGC                                         >  7:331286/1‑137
                                                                                                                            GACGGCAACCGCAAGGTTACC‑‑GTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGC                                         <  8:331286/137‑1
                                                                                                                                                CTGGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGT           <  1:27627/149‑1
                                                                                                                                                   GTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGTTCC        <  4:404436/149‑1
                                                                                                                                                    TCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGTTCCA       <  8:287566/149‑1
                                                                                                                                                      GGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCAAGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCAAGAACTAGACCTTGTCGTCGATGTTCCA       >  2:387736/1‑147
                                                                                                                                                       GCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGTTC         <  4:328698/144‑1
                                                                                                                                                       GCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGTTC         >  3:328698/1‑144
                                                                                                                                                         ACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGTTCCACAGGT  >  5:271744/1‑149
                                                                                                                                                                                                                                                                                                              
GTTCGTGGCCAGCAGCAAGGACCCGGTCAAGGTGCAGATGTTCGTGCCACCGCTGAACCGCGACTACGTCAGCCTCAACGAGAGCTTCATCTCCAACAACTACGGGGTCAGCATCAACCGTGCCGACGGCAACCGCAAGGTTACCTGGTCGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2660186‑2660031
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcacgGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACCGGGTCCTTGCTGCTGGCCACGAACTCGACCTTGGCGTCGATGTTCCACAGGT  >  NC_002947/2660069‑2660214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.