New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 359199371 (1.110)7 (0.110) 6/242 NT 9.3% coding (41/912 nt) PP_3170 LysR family transcriptional regulator
?NC_002947 = 3592039 69 (1.130)coding (87/912 nt) PP_3170 LysR family transcriptional regulator

AATAGATCAGGAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3591880‑3591993
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcagGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAGGCGGCGATGTCGCCGAAGCGGTTGGGTTCCATGGTGTTTTCCTGACGCTGATCGAACCGCCATAGATGGGTGCAATTTCAGGCAATGCAAG  <  NC_002947/3592039‑3591894
                                                                                                                                                                                                                                                                    
AATAGATCAGGAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACAATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGG                                                                                                                 >  3:245339/1‑149
                   ATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAA                                                                                              <  4:245339/149‑1
                    TTGCCTGAAATTGCACCCATCTCTGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACCTCGCCGCCTTCGTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAG                                                                                             <  2:298533/149‑1
                                            GGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAG                                                                                             <  5:80627/125‑1
                                            GGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAG                                                                                             >  6:80627/1‑125
                                                                GAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGAC                                                                                                 <  5:111481/101‑1
                                                                GAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGAC                                                                                                 >  6:111481/1‑101
                                                                                                            CGTCACGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAGGCGGCGATGTCGCCGAAGCGGTTGGGTTCCATGGTGTTTTCCTGACGCTGATCGAACCGCCATAGATGGGTGCAATTTCAGGCAATGC     <  7:55677/149‑1
                                                                                                             GTCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAGGCGGCGATGTCGCCGAAGCGGTTGGGTTCCATGGTGTTTTCCTGCCGCTGATCGAACCGCCATAGATGGGTGCAATTTCAGGCAATGC     >  7:93788/1‑148
                                                                                                              TCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAGGCGGCGATGTCGCCGAAGCGGTTGGGTTCCATGGTGTTTTCCTGACGCTGATCGAACCGCCATAGATGGGTGCAATTTCAGGCAATGCAA   <  2:185253/149‑1
                                                                                                              TCAGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAGGCGGCGATGTCGCCGAAGCGGTTGGGTTCCATGGTGTTTTCCTGACGCTGATCGAACCGCCATAGATGGGTGCAATTTCAGGCAATGCAA   <  8:25387/149‑1
                                                                                                                AGGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAGGCGGCGATGTCGCCGAAGCGGTTGGGTTCCATGGTGTTTTCCTGACGCTGATCGAACCGCCATAGATGGGTGCAATTTCAGGCAATGCAAG  <  1:41707/148‑1
                                                                                                                                                                                                                                                                    
AATAGATCAGGAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3591880‑3591993
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcagGCCCAGGCTGGCAGCAGCAGCGGTGAAGCTGCCGGCCTTCGCGGCGCTGACGAAGGCGGCGATGTCGCCGAAGCGGTTGGGTTCCATGGTGTTTTCCTGACGCTGATCGAACCGCCATAGATGGGTGCAATTTCAGGCAATGCAAG  <  NC_002947/3592039‑3591894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.