| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3969591 | NA (NA) | 3 (0.050) | 3/240 | NT | NA | coding (226/321 nt) | PP_3499 | transposase |
| ? | NC_002947 | = 3969615 | NA (NA) | coding (250/321 nt) | PP_3499 | transposase | |||||
AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3969437‑3969591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatcaCTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGA < NC_002947/3969615‑3969469 AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAG > 2:200667/1‑149AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAG > 6:47548/1‑149 CCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGATATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTG < 3:293250/149‑1 CCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGT > 2:166479/1‑148 CCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGT > 2:183597/1‑148 CCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGT > 8:140473/1‑148 CGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGA < 7:140473/149‑1 GTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGA > 7:220080/1‑148 GTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA > 6:401067/1‑149 CCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACT < 6:127653/149‑1 CGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAG < 1:41408/107‑1 CGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAG > 2:41408/1‑107 CGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTG < 2:27113/102‑1 ATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATC < 6:18175/116‑1 ATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATC > 5:18175/1‑116 TCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCACTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGAT < 6:275844/84‑1 TCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCACTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGAT > 5:275844/1‑84 GTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTG < 4:68872/135‑1 GTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTG < 4:74353/135‑1 GTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTG > 3:74353/1‑135 GTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTG > 3:68872/1‑135 GTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCG > 5:259777/1‑66 GTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCG < 6:259777/66‑1 TGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCA < 2:348308/149‑1 GATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGAT < 8:199049/138‑1 GATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGAT > 7:199049/1‑138 ATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATT > 7:119853/1‑149 ATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCAT < 2:134997/148‑1 ATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCAT < 3:319108/148‑1 TCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATT > 2:222082/1‑148 CACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGA > 8:220080/1‑149 ACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT > 4:227628/1‑87 AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3969437‑3969591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatcaCTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGA < NC_002947/3969615‑3969469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |