| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3970106 | NA (NA) | 4 (0.070) | 3/240 | NT | NA | coding (25/1536 nt) | PP_3501 | transposase |
| ? | NC_002947 | = 3970164 | NA (NA) | coding (83/1536 nt) | PP_3501 | transposase | |||||
CAGGCGTTGGTACTGGGTTTGCCGTGGCAGCGAGTCGGCGCGGGTGGCGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3969953‑3970106‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgaccTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGGCGATT < NC_002947/3970164‑3970017 CAGGCGTTGGTACTGGGTTTGCCGTGGCAGCGAGTCGGCGCGGGTGGCGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCT > 1:229935/1‑149CAGGCGTTGGTACTGGGTTTGCCGTGGCAGCGAGTCGGCGCGGGTGGCGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCT > 4:6693/1‑149 GCGTTGGTACTGGGTTTGCCGTGGCAGCGAGTCGGCGCGGGTGGCGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGA > 6:245964/1‑149 GTTGGTACTGGGTTTGCCGTGGCAGCGAGTCGGCGCGGGTGGCGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGAC > 5:355267/1‑148 GTTGGTACTGGGTTTGCCGTGGCAGCGAGTCGGCCCGGGTGGCCTGATCAGCATCCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGAC > 6:75462/1‑148 AGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGAC < 6:369790/99‑1 AGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGAC > 5:369790/1‑99 GTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGAC < 4:7539/91‑1 GTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGAC > 3:7539/1‑91 GGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGG > 5:228306/1‑143 GGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGG < 6:228306/143‑1 ATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCTGGGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGAGTCATCTGGTCGAGATTGG < 6:412344/149‑1 TTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGG < 3:196086/149‑1 CTCGACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTTCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCG > 1:106425/1‑149 CTCGACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCG > 2:404243/1‑149 GACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGGC > 4:141695/1‑148 GACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGG < 7:249312/147‑1 ACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGGCGA < 3:164419/149‑1 ACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATT < 4:172753/96‑1 ACCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATT > 3:172753/1‑96 CCTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGGCGAT > 6:320138/1‑149 CTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGGCGATT < 7:392985/149‑1 CTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGGCGAT > 1:235149/1‑148 CAGGCGTTGGTACTGGGTTTGCCGTGGCAGCGAGTCGGCGCGGGTGGCGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGCTTGTCGTCGCATCGCGCCTGGTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3969953‑3970106‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgaccTGAGACTGCAACTGCAACGCCTGTGCCGCCAAGGCACGAAGCTGTTCCGGGGTCATCTGGTCGAGATTGGGCGAGAAAGTCATGCCGCCGATTGTGCCAGACCAGGCGCGATGCGACGACAAGCAGACCGGTCAAATGGCCGGCGATT < NC_002947/3970164‑3970017 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |