New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3995582	54 (0.840)	4 (0.070)	3/240	NT	6.8%	coding (226/423 nt)	PP_3522	hypothetical protein
	?	NC_002947	= 3995660	58 (0.960)					coding (148/423 nt)	PP_3522	hypothetical protein

CATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTGCGCTCCCCAGGCCCTGTCGGCCTCAGCCACCCATTGGTGCAGGCGCGCTTCGGAGTGCTCGACAATCAGCAGGGTCAGCTTGAACACCTGGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3995430‑3995582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccagTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGCTGGCCAACCTGGAGCGGGCCCTGGCGTCGAAAGGTGCCAGCCTGGCCCAGGTGTTCAAGCTGACCCTGCTGATTGTCGAGCACTCCGAAGCGCGCCTGCACCAATGGG  <  NC_002947/3995660‑3995516                                                                                                                                                                                                                                                                                                            CATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTGCGCTCCCCAGGCCCTGTCGGCCTCAGCCACCCATTGGTGCAGGCGCGCTTCGGAGTGCTCGACAATCAGCAGGGTCAGCTTGAACACCTGGG                                                                                                                                                       <  8:126728/149‑1                                          AGGTCGGTTTCATGTGCGCTCCCCAGGCCCTGTCGGCCTCAGCCACCCATTGGTGCAGGCGCGCTTCGGAGTGCTCAACAATCAGCAGGGTCAGCTTGAACACCTGGGCCAGTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGC                                                                                                              >  3:204299/1‑149                                                               ccaAGGCCCTGTCGGCCTCAGCCACCCATTGGTGCAGGCGCGCTTCGGAGTGCTCGACAATCAGCAGGGTCAGCTTGAACACCTGGGCCAGTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGCTGGCCAACCTGGAGCGGGCCC                                                                                         >  7:93095/4‑149                                                                                        CCATTGGTGCAGGCGCGCTTCGGAGTGCTCAACAATCAGCAGGGTCAGCTTGAACACCTGGGCCAGTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGCTGGCCAACCTGGAGCGGGCCCTGGCGTCGAAAGGTGCCAGCCTGGC                                                                <  4:204299/149‑1                                                                                                  AGGCGCGCTTCGGAGTGCTCGACAATCAGCAGGGTCAGCTTGAACACCTGGGCCAGTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGCTGGCCAACCTGGAGCGGGCCCTGGCGTCGAAAGGTGCCAGCCTGGCCCAGGTGTTC                                                      <  8:93095/149‑1                                                                                                                                                      CCAGTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGCTGGCCAACCTGGAGCGGGCCCTGGCGTCGAAAGGTGCCAGCCTGGCCCAGGTGTTCAAGCTGACCCTGCTGATTGTCGAGCACTCCGAAGCGCGCCTGCACCAATGGG  <  4:190908/149‑1                                                                                                                                                      CCAGTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGCTGGCCAACCTGGAGCGGGCCCTGGCGTCGAAAGGTGCCAGCCTGGCCCAGGTGTTCAAGCTGACCCTGCTGATTGTCGAGCACTCCGAAGCGCGCCTGCACCAATGGG  >  4:326772/1‑149                                                                                                                                                                                                                                                                                                            CATGCCGTCCAGTGCCAGCCGGGGCACCGGTATCAGCGTGCAGGTCGGTTTCATGTGCGCTCCCCAGGCCCTGTCGGCCTCAGCCACCCATTGGTGCAGGCGCGCTTCGGAGTGCTCGACAATCAGCAGGGTCAGCTTGAACACCTGGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3995430‑3995582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccagTTGTCACCTGTGTTCGCCGAACAGGCCCGGCAGGCGCTGGCCAACCTGGAGCGGGCCCTGGCGTCGAAAGGTGCCAGCCTGGCCCAGGTGTTCAAGCTGACCCTGCTGATTGTCGAGCACTCCGAAGCGCGCCTGCACCAATGGG  <  NC_002947/3995660‑3995516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.