New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4089876 =	64 (1.000)	6 (0.100)	5/234	NT	9.2%	intergenic (+31/‑74)	kdgD/gudP	5‑dehydro‑4‑deoxyglucarate dehydratase/glucarate transporter
	?	NC_002947	4089901 =	59 (1.000)					intergenic (+56/‑49)	kdgD/gudP	5‑dehydro‑4‑deoxyglucarate dehydratase/glucarate transporter

GCATAGTTGATCGTGGTCACCAGAAACAGCATGAACAGGATCAGGTAGCGCACATGCGTTTTCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGGTAGGCCCACTCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4090026‑4089876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccactccggCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGC  >  NC_002947/4089901‑4090044                                                                                                                                                                                                                                                                                                         GCATAGTTGATCGTGGTCACCAGAAACAGCATGAACAGGATCAGGTAGCGCACATGCGTTTTCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATCTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGGTAGGCCCACTCC                                                                                                                                                    >  5:167466/1‑149   ATAGTTGATCGTGGTCACCAGAAACAGCATGAACAGGATCAGGTAGCGCACATGCGTTTTCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGGTAGGCCCACTCCGG                                                                                                                                                  >  1:179969/1‑149           TCGTGGGCACCAGCACCAGCATGAACAGGATCAGGTAGCGCACATGCGTTTTCTTAGTCGCTTCCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGCCTACCCCACTCCGGCTACAATT                                                                                                                                          <  2:165814/149‑1                                                       TGCGTTTTCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGCCTACCCCACTCCGGCTACAATT                                                                                                                                          <  5:56034/105‑1                                                       TGCGTTTTCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGCCTACCCCACTCCGGCTACAATT                                                                                                                                          >  6:56034/1‑105                                                                                                                           GTAGCCGGAGTGGGGTAGGCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCA                           <  1:165814/148‑1                                                                                                                               CCGGAGTGGGGTAGGCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGC                                                                                                     >  3:263613/1‑70                                                                                                                               CCGGAGTGGGGTAGGCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGC                                                                                                     <  4:263613/70‑1                                                                                                                                                   TCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGC  >  4:158408/1‑149                                                                                                                                                                                                                                                                                                         GCATAGTTGATCGTGGTCACCAGAAACAGCATGAACAGGATCAGGTAGCGCACATGCGTTTTCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGGTAGGCCCACTCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4090026‑4089876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccactccggCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGC  >  NC_002947/4089901‑4090044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.