New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4164673 =	59 (0.920)	3 (0.050)	3/244	NT	5.2%	intergenic (+23/+94)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
	?	NC_002947	4164757 =	53 (0.860)					intergenic (+107/+10)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter

GCTGGTGGCCATGCTGATGTGTCGGGAGACGGCGCACGCGGCCCTTGAAGATTAGTTGACCTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4164821‑4164673 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTGCCGGGGCCAGCTTGCTGCCCGTCACCTGAATCAGCCAGGTGGCAATG  >  NC_002947/4164757‑4164899                                                                                                                                                                                                                                                                                                      GCTGGTGGCCATGCTGATGTGTCGGGAGACGGCGCACGCGGCCCTTGAAGATTAGTTGACCTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAG                                                                                                                                                 >  5:221986/1‑149    GGTGGCCATGCTGATGTGTCGGGAGACGGCGCACGCGGCCCTTGAAGATTAGTTGACCTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGG                                                                                                                                                     >  1:257908/1‑142    GGTGGCCATGCTGATGTGTCGGGAGACGGCGCACGCGGCCCTTGAAGATTAGTTGACCTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGG                                                                                                                                                     <  2:257908/142‑1           ATGCTGATGTGTCGGGAGACGGCGCACGCGGCCCTTGAAGATTAGTTGACCTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCC                                                                                                                                                   <  7:21201/137‑1           ATGCTGATGTGTCGGGAGACGGCGCACGCGGCCCTTGAAGATTAGTTGACCTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCC                                                                                                                                                   >  8:21201/1‑137                                                             CTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCA                                                                                     >  1:51698/1‑149                                                                 ACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCCGCATGGCCACCcg                                                                                 >  6:59806/1‑147                                                                                             GCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTAT                                                     <  5:59806/149‑1                                                                                                                                                 GCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTGCCGGGGCCAGCTTGCTGCCCGTCACCTGAATCAGCCAGGTGGCAATG  >  6:235941/1‑148                                                                                                                                                                                                                                                                                                      GCTGGTGGCCATGCTGATGTGTCGGGAGACGGCGCACGCGGCCCTTGAAGATTAGTTGACCTGCACTGGCTTCTTCTCACGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4164821‑4164673 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTGCCGGGGCCAGCTTGCTGCCCGTCACCTGAATCAGCCAGGTGGCAATG  >  NC_002947/4164757‑4164899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.