New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4250365 =	61 (0.950)	3 (0.050)	3/244	NT	5.4%	coding (840/1161 nt)	PP_3725	acyl‑CoA dehydrogenase
	?	NC_002947	4250414 =	46 (0.750)					coding (791/1161 nt)	PP_3725	acyl‑CoA dehydrogenase

GGGCAAGGGCTGGGAAGTGGCCAACGCCTGGCTTACCGCCGGCCGGGTGATGGTCGCCGCCAACTGCGTGGGCCAGGCCCAGCGCGCCCTCGACCTGTCGCTGCAATGGGCCGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4250512‑4250365 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcGACAGGTCGAGGGCGCGCTGGGCCTGGCCCACGCAGTTGGCGGCGACCATCACCCGGCCGGCGGTAAGCCAGGCGTTGGCCACTTCCCAGCCCTTGCCCACTTCGCCCAGCACCTTGCTGGCCGGCACCCGGCAGTCGTCGAAG  >  NC_002947/4250414‑4250557                                                                                                                                                                                                                                                                                                      GGGCAACGGCTGGGAAGTGGCCAACGCCTGGCTTACCGCCGGCCGGGTGATGGTCGCCGCCAACTGCGTGGGCCAGGCCCAGCGCGCCCTCGACCTGTCGCTGCAATGGGCCGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCAGC                                                                                                                                                  >  4:15114/1‑148       GGGCTGGGAAGTGGCCAACGCCTGGCTTACCGCCGGCCGGGTGATGGTCGCCGCCAACTGCGTGGGCCAGGCCCAGCGCGCCCTCGACCTGTCGCTGCAATGGGCCGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCA                                                                                                                                                    <  7:110108/140‑1       GGGCTGGGAAGTGGCCAACGCCTGGCTTACCGCCGGCCGGGTGATGGTCGCCGCCAACTGCGTGGGCCAGGCCCAGCGCGCCCTCGACCTGTCGCTGCAATGGGCAGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCA                                                                                                                                                    >  8:110108/1‑140                                                                                              CCTGTCGCTGCAATGGGCCGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCAGCGACAGGTCGAGGGCGCGCTGGGCCTGGCCCACGCAGTTGGCGGCGACCATCACCCGGCCGGCGGTAAGCCAGGC                                                                        >  5:247551/1‑129                                                                                              CCTGTCGCTGCAATGGGCCGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCAGCGACAGGTCGAGGGCGCGCTGGGCCTGGCCCACGCAGTTGGCGGCGACCATCACCCGGCCGGCGGTAAGCCAGGC                                                                        <  6:247551/129‑1                                                                                                  TCGCTGCAATGGGCCGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCAGCGACAGGTCGAGGGCGCGCTGGGCCTGGCCCACGCAGTTGGCGGCGACCATCACCCGGCCGGCGGTAAGCCAGGCGTTGGCCACTTCCCAGCCCTTGCC                                                >  7:225459/1‑149                                                                                                                                                 CAGCGACAGGTCGAGGGCGCGCTGGGCCTGGCCCACGCAGTTGGCGGCGACCATCACCCGGCCGGCGGTAAGCCAGGCGTTGGCCACTTCCCAGCCCTTGACCACTTCGCCCAGCACCTTGCTGGCCGGCACCCGGCAGTCGTCGAAG  >  4:235333/1‑148                                                                                                                                                                                                                                                                                                      GGGCAAGGGCTGGGAAGTGGCCAACGCCTGGCTTACCGCCGGCCGGGTGATGGTCGCCGCCAACTGCGTGGGCCAGGCCCAGCGCGCCCTCGACCTGTCGCTGCAATGGGCCGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4250512‑4250365 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcGACAGGTCGAGGGCGCGCTGGGCCTGGCCCACGCAGTTGGCGGCGACCATCACCCGGCCGGCGGTAAGCCAGGCGTTGGCCACTTCCCAGCCCTTGCCCACTTCGCCCAGCACCTTGCTGGCCGGCACCCGGCAGTCGTCGAAG  >  NC_002947/4250414‑4250557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.