New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4569388 =	56 (0.880)	4 (0.070)	4/240	NT	7.0%	coding (1318/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_002947	4569469 =	54 (0.890)					coding (1399/2070 nt)	malQ	4‑alpha‑glucanotransferase

ACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4569541‑4569388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcagGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGTGCCCGACAGCCTGCGCGAAAAGCTGG  >  NC_002947/4569469‑4569613                                                                                                                                                                                                                                                                                                             ACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGACGTTGGCC                                                                                                                                                        >  1:371123/1‑149  CTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCC                                                                                                                                                       <  1:312117/149‑1     CAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCGCA                                                                                                                                                    >  4:91384/1‑149     CAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCGCA                                                                                                                                                    <  1:151085/149‑1     CAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCG                                                                                                                                                      >  6:352144/1‑147                                  GCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCC                                                                                                                                                       >  3:262211/1‑117                                  GCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCC                                                                                                                                                       <  4:262211/117‑1                                            GAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGC                                                                                                                                                         <  2:265690/105‑1                                            GAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGC                                                                                                                                                         >  1:265690/1‑105                                                                        CCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCGCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCG                                                                                 >  3:36498/1‑149                                                                         CCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCGCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGC                                                                                >  5:220690/1‑149                                                                                             CGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCGCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAG                                                            <  6:220690/149‑1                                                                                                                                 CCAGCGTGGGCGAGGTTGGCCCGCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGTGCCC                        <  4:36498/149‑1                                                                                                                                                     CCGCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGTGCCCGACAGCCTGCGCGAAAAGCT    >  4:223217/1‑149                                                                                                                                                     CCGCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGTGCCCGACAGACTGCGCGAAAAGCT    >  2:250766/1‑149                                                                                                                                                       GCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGTGCCCGACAGCCTGCGCGAAAAGCTGG  >  1:166508/1‑149                                                                                                                                                       GCAGGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGTGCCCGACAGCCTGCGCGAAAAGCTGG  >  1:161508/1‑149                                                                                                                                                                                                                                                                                                             ACTCCAGCGCCAGCAGGCGCAACAGGTCGTCTAGCGGGTAGTCGAGGTAGGCGCCCTCGCTGGGTTTGGCCCCCTGCGGGATCAGCCATAGCCGGCGCAGGCCCATCACATGGTCGATGCGCAGGCCGCCAGCGTGGGCGAGGTTGGCCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4569541‑4569388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcagGGGGCCAAACCCAGCGAGGGCGCCTACCTCGACTACCCGCTAGACGACCTGTTGCGCCTGCTGGCGCTGGAGTCGGTGCGTCACCAGGCGATCATCCTGGGTGAAGACCTGGGCACCGTGCCCGACAGCCTGCGCGAAAAGCTGG  >  NC_002947/4569469‑4569613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.