| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4770605 = | 69 (1.080) | 6 (0.100) | 6/246 | NT | 7.9% | coding (8662/10413 nt) | pvdD | non‑ribosomal peptide synthetase |
| ? | NC_002947 | 4770658 = | 73 (1.180) | coding (8609/10413 nt) | pvdD | non‑ribosomal peptide synthetase | |||||
ACCCCGGAGCAGACCTGCCAGGCACTGCATCGCCATGGCGTGAGCGTCGCAGCGTTCCCGCCGGTGTACTTGCAGCAATTGATCGAGCAGGTACGCGAGCACGGCAACCCACCGCCGATGCGCATCTATTGCTTCGGCGGT‑‑GATGCG‑‑‑‑‑GTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4770755‑4770605‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGGGTCCACAGCTCATCGCCGCGCAGCAGCACACTGCCGCCGTGGGTCAAT > NC_002947/4770658‑4770801 ACCCCGGAGCAGACCTCCCAGGCACTGCATCGCCATGGCGTGAGCGTCGCAGCGTTCCCGCCGGTGTACTTGCAGCAATTGATCGAGCAGGTACGCGAGCACGGCAACCCACCGCCGATGCGCATCTATTGCTTCGGCGGT‑‑GATGCG‑‑‑‑‑GT < 7:305067/149‑1 CCCCGGAGCAGACCTGCCAGGCTCTGCATCGCCATGGCGTGAGCGTCGCAGCGTGCCCGCCGGTGTACTTGCAGCAATTGATCGAGCAGGTACGCGAGCACGGCAACCCACCGCCTATGCGCATCTATTGCTTCGGCGGT‑‑GATGCG‑‑‑‑‑GTG < 4:319820/149‑1 GCACGGCAACCCACCGCCGATGCGCATCTATTGCTTCGGCGGTGGGTTGCC‑‑‑‑‑GTGCTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCG > 1:13864/1‑149 CGGCAACCCACCGCCGATGCGCATCTATTGCTTCGGCGGTGGGTTGCC‑‑‑‑‑GTGCTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGGG < 2:13864/149‑1 CGCCGATGCGCATCTATTGCTTCGGCGGT‑‑GATGCG‑‑‑‑‑GTGCTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGG > 5:143910/1‑135 CGCCGATGCGCATCTATTGCTTCGGCGGT‑‑GATGCG‑‑‑‑‑GTGCTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGG < 6:143910/135‑1 CGCCGATGCGCATCTATTGCTTCGGCGGT‑‑GATGCG‑‑‑‑‑GTGCTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTG < 4:229137/115‑1 CCGATGCGCATCTATTGCTTCGGCGGT‑‑GATGCGGTGCCGTGCTCGCGTACCTGCTCGATCAATTGCTGCAACTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGGGTCCACAGCT > 4:274342/1‑148 TGCTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGGGTCCACAGCTCATCGCCGCGCAGCAGCACACTGCCGCCGTGGGTCAAT < 1:145089/147‑1 TGCTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGGGTCCACAGCTCATCGCCGCGCAGCAGCACACTGCCGCCGTGGGTCAAT > 2:145089/1‑147 ACCCCGGAGCAGACCTGCCAGGCACTGCATCGCCATGGCGTGAGCGTCGCAGCGTTCCCGCCGGTGTACTTGCAGCAATTGATCGAGCAGGTACGCGAGCACGGCAACCCACCGCCGATGCGCATCTATTGCTTCGGCGGT‑‑GATGCG‑‑‑‑‑GTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4770755‑4770605‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcTCGCGTACCTGCTCGATCAATTGCTGCAAGTACACCGGCGGGAACGCTGCGACGCTCACGCCATGGCGATGCAGTGCCTGGCAGGTCTGCTCCGGGGTCCACAGCTCATCGCCGCGCAGCAGCACACTGCCGCCGTGGGTCAAT > NC_002947/4770658‑4770801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |