New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4852453	16 (0.250)	8 (0.180)	8/172	NT	33.4%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4852512	21 (0.480)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator

TGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4852276‑4852453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcttttttgtgggagcggccttgtgtcgcgaaagggGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTT  <  NC_002947/4852512‑4852388                                                                                                                                                                                                                                                                                                                 TGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTT                                                                                                                                                            >  7:383498/1‑149  GGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTT                                                                                                                                                           >  7:234470/1‑149     AAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTG                                                                                                                                                        <  7:139118/149‑1      AGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGG                                                                                                                                                       <  2:205017/149‑1              AGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCC                                                                                                                                               >  2:139165/1‑149                GCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTT                                                                                                                                             >  7:198619/1‑149                   GTCTATCAGTTGGCGGATGAGCTGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATCCCCAGCGGGGGCGGTGGCGTCAAATCACCGCGCACAAAGCCTGCCAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTG                                                                                                                                          <  5:410888/149‑1                          AGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGA                                                                                                                                    >  4:360505/1‑148                           GTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAA                                                                                                                                  <  8:179055/149‑1                           GTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGA                                                                                                                                    >  7:179055/1‑147                            TTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAG                                                                                                                                 >  7:98931/1‑149                            TTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAG                                                                                                                                 >  4:282339/1‑149                              GGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGTGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGAGGCCTTGTGTCGCGAAAGG                                                                                                                                >  3:334887/1‑148                                          GGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGT                                                                                                                                           <  2:237867/125‑1                                          GGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGT                                                                                                                                           >  1:237867/1‑125                                             TGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAA                                                                                                                                  <  8:316619/131‑1                                             TGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAA                                                                                                                                  >  7:316619/1‑131                                                                   ACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGT                                                                                                                                                         >  1:201786/1‑86                                                                   ACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGT                                                                                                                                                         <  2:201786/86‑1                                                                     AATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTT                                                                                                                                                           <  6:426951/82‑1                                                                     AATTCAATAAGAGGCGGTTTAAACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTT                                                                                                                                                           >  5:426951/1‑82                                                                                     GTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTC                                                                        >  3:16119/1‑149                                                                                         ATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCA                                                                     <  4:16119/148‑1                                                                                          TACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAG                                                                    <  3:282339/148‑1                                                                                             CCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCGGCATGGCAGCCCT                                                                >  4:128445/1‑149                                                                                              CAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCC                                                                  >  4:303137/1‑146                                                                                              CAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCC                                                                  <  3:303137/146‑1                                                                                                  GGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGC                                                           <  3:128445/149‑1                                                                                                    GGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGTGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGA                                                         <  8:98931/149‑1                                                                                                                                                 TTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCA                                                                     >  1:213795/1‑92                                                                                                                                                 TTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCA                                                                     <  2:213795/92‑1                                                                                                                                                           GAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGG                                                                                 <  4:261328/70‑1                                                                                                                                                           GAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGG                                                                                 >  3:261328/1‑70                                                                                                                                                                           CGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTT  <  3:242953/133‑1                                                                                                                                                                            GAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGA                             <  5:368438/105‑1                                                                                                                                                                                                                                                                                                                 TGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4852276‑4852453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcttttttgtgggagcggccttgtgtcgcgaaagggGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTT  <  NC_002947/4852512‑4852388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.