New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4860126 =	72 (1.130)	4 (0.070)	4/232	NT	5.9%	coding (924/2331 nt)	ligA	DNA ligase
	?	NC_002947	4860172 =	61 (1.040)					coding (878/2331 nt)	ligA	DNA ligase

AAACATGCGGCGGGCATCGAAGAGTGCCTGGCCTACTATCGCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4860284‑4860126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctgggcgGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGGCCTTGA  >  NC_002947/4860172‑4860319                                                                                                                                                                                                                                                                                                                     AAACATGCGGCGGGCATCGAAGAGTGCCTGGCCTACTATCGCGACATTGGCCAGCGGAGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACACCCTGGCCGCCCAGAGCGAGCTCGGATTCCGCGCCCCTGAGCC                                                                                                                                                                >  8:116395/1‑149     ATGCGGCGGGCTTCTAATAGTGCCTGGCCTACTATCGCGACATTGGCGAGCGGCTTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGGTTCCGCGCCCGTGAGCCGCGC                                                                                                                                                            <  4:145187/149‑1       GCGGCGGGCATCGAAGAGTGCCTGGCCTACTATCGCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTG                                                                                                                                                          >  6:123076/1‑149                                         GCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCT                                                                                                                                                           >  5:57025/1‑114                                         GCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCT                                                                                                                                                           >  5:63176/1‑114                                         GCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCT                                                                                                                                                           <  6:57025/114‑1                                         GCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCT                                                                                                                                                           <  6:63176/114‑1                                                                                                                   GCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGC                                              >  5:113352/1‑149                                                                                                                     CCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGGCCAGGCTCTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCG                                            >  8:288367/1‑149                                                                                                                              GCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGA                                                                           <  1:235606/109‑1                                                                                                                              GCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGA                                                                           >  2:235606/1‑109                                                                                                                                                        GCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGCCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAG         <  6:113352/149‑1                                                                                                                                                         CTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGG        >  1:220509/1‑149                                                                                                                                                         CTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGG        <  7:288367/149‑1                                                                                                                                                            GGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGGCC      <  4:318598/148‑1                                                                                                                                                               GGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGGCCTTGA  <  2:220509/149‑1                                                                                                                                                                                                                                                                                                                     AAACATGCGGCGGGCATCGAAGAGTGCCTGGCCTACTATCGCGACATTGGCGAGCGGCGTAACAGCCTGCCGTATGAGATCGACGGGGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4860284‑4860126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctgggcgGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGGCCTTGA  >  NC_002947/4860172‑4860319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.