| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5036412 = | NA (NA) | 3 (0.050) | 3/240 | NT | NA | coding (220/321 nt) | PP_4441 | transposase |
| ? | NC_002947 | 5036450 = | NA (NA) | coding (258/321 nt) | PP_4441 | transposase | |||||
CCGGCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5036565‑5036412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcacGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCG > NC_002947/5036450‑5036596 CCGGCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGAT < 1:198410/148‑1CCGGCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGAT < 4:361406/148‑1 CGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCA < 4:215769/149‑1 GCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCAC < 2:351224/149‑1 ATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGAT > 6:306446/1‑133 ATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGAT < 5:306446/133‑1 AGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGAT < 6:149177/114‑1 AGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGAT > 5:149177/1‑114 ACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTG < 1:335157/128‑1 ACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTG > 2:335157/1‑128 CCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGC > 4:398718/1‑149 TGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGGTGCGCGCAATTTATCCGGGCTGGCGCTCAATGATCCGCTTCGATGCGAGCTGGCTGGCCACGGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGA < 8:372464/149‑1 TGATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGA > 7:181181/1‑149 ATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATC > 1:125142/1‑149 ATCACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCACGGGTGATC < 3:361406/149‑1 ACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCG < 2:125142/149‑1 ACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATG > 4:322165/1‑110 ACGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATG < 3:322165/110‑1 CCGGCGCGCATATCCATCGGCTCGGTGGCCAGCCAGATCGCATCGATGCGGATCATTGAGCGACAGCCCGGATAAATTGCGCGCAGCCCTCAGGATCTGAGGTTGGCCATTTCACCGTGATCACTTGCCCGGTCATAGGCAACTCGATGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5036565‑5036412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcacGGTGAAATGGCCAACCTCAGATCCTGAGGGCTGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGGTGATCGCG > NC_002947/5036450‑5036596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |