New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5435164	73 (1.140)	6 (0.100)	4/244	NT	7.6%	coding (100/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	NC_002947	= 5435192	75 (1.220)					coding (72/2529 nt)	hrpB	ATP‑dependent helicase HrpB

CGGTAACCCACCGTTT‑CCCCAACCTGCTCGCCCAGCTCACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5435013‑5435164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCACCCGCGTGCCACTGGCGCTGCTGCACGAACCGTGGCTGGCCGGGCAGAGCATCCTAATGCTCGAGCCACGGCGCCTGGCTGCGCGGGCAGCGGCCGAACGGCTGGCCAGTGAGC  <  NC_002947/5435192‑5435047                                                                                                                                                                                                                                                                                                              CGGTAACCCACCGTTT‑CCCCAACCTGCTCGCCCAGCTCACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGT                                                                                                                                                       <  8:294024/149‑1  GGTAACCCACCGTTT‑CCCCAACCTGCTCGCCCAGCTCACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTG                                                                                                                                                      <  1:95006/149‑1  GGTAACCCACCGTTT‑CCCCAACCTGCTCGCCCAGCTCACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTG                                                                                                                                                      <  7:22460/149‑1   GTAACCCACCGTTTCCCCCATCCTGCTCGCCCAGCTCAGTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCGGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTG                                                                                                                                                      <  2:120039/149‑1                    CCAACCTGCTCGCCCAGCTCACTGGCCAGCCGTTCGGACCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGTGCTTGAAGCGCCGC                                                                                                                                      >  1:71971/1‑149                                        ACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCACCC                                                                                                                 <  2:71971/149‑1                                        ACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCAC                                                                                                                   <  3:28220/147‑1                                        ACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCAC                                                                                                                   <  3:366770/147‑1                                          TGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCAC                                                                                                                   >  5:355054/1‑145                                          TGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCAC                                                                                                                   <  6:355054/145‑1                                                                                                                                                        GGTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCACCCGCGTGCCACTGGCGCTGCTGCACGAACCGTGGCTGGCCGGGCAGAGCATCCTAATGCTCGAGCCACGGCGCCTGGCTGCGCGGGCAGCGGCCGAACGGCTGGCCAGTGAGC  >  4:67269/1‑149                                                                                                                                                         GTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCACCCGCGTGCCACTGGCGCTGCTGCACGAACCGTGGCTGGCCGGGCAGAGCATCCTAATGCTCGAGCCACGGCGCCTGGCTGCGCGGGCAGCGGCCGAACGGCTGGC          >  3:46361/1‑140                                                                                                                                                         GTGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCACCCGCGTGCCACTGGCGCTGCTGCACGAACCGTGGCTGGCCGGGCAGAGCATCCTAATGCTCGAGCCACGGCGCCTGGCTGCGCGGGCAGCGGCCGAACGGCTGGC          <  4:46361/140‑1                                                                                                                                                         GTGCTTGAAGCGCCGCCTGGCGCTGGCAAGAACACCCGCGTGCCACTGGAGCTGCTGCACGAACAGTGGCTGGCCGGGCAGAGCATCCTAATGCTCGAGCCACGGCGCCTGGCTGCGCTGGCAGCGGCAGAACGCCTGGCCAGTGAc   >  4:374517/1‑146                                                                                                                                                                                                                                                                                                              CGGTAACCCACCGTTT‑CCCCAACCTGCTCGCCCAGCTCACTGGCCAGCCGTTCGG‑CCGCTGCCCGCGCAGCCAGGCGCCGTGGCTCGAGCATTAGGATGCTCTGCCCGGCCAGCCACGGTTCGTGCAGCAGCGCCAGTGGCACGCGGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5435013‑5435164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtGCTTGAAGCGCCGCCTGGCGCTGGCAAGACCACCCGCGTGCCACTGGCGCTGCTGCACGAACCGTGGCTGGCCGGGCAGAGCATCCTAATGCTCGAGCCACGGCGCCTGGCTGCGCGGGCAGCGGCCGAACGGCTGGCCAGTGAGC  <  NC_002947/5435192‑5435047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.