New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5499260 =	60 (0.940)	4 (0.070)	4/236	NT	7.2%	coding (38/720 nt)	cobK	precorrin‑6x reductase
	?	NC_002947	5499339 =	47 (0.790)					coding (117/720 nt)	cobK	precorrin‑6x reductase

GTGATGCCCGCTTCGCGCAGGTAACGGGTCAGGCCCTCGACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5499413‑5499260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggcttGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGC  >  NC_002947/5499339‑5499485                                                                                                                                                                                                                                                                                                               GTGATGCCCGCTTCGCGCAGGTAACGGGTCAGGCCCTCGACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAG                                                                                                                                                          <  1:118235/149‑1  TGATGCCCGCTTCGCGCAGGTAACGGGTCAGGCCCTCGACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGG                                                                                                                                                         >  3:312711/1‑149    ATGCCCGCTTCGCTCAGGTAACGGGTCAGGCCCTCTACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGG                                                                                                                                                        <  1:252650/148‑1        CCGCTTCGCGCAGGTAACGGGTCAGGCCCTCGACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGGCTT                                                                                                                                                     >  2:120843/1‑147                             TCAGGCCCTCGACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGC                                                                                                                                                             >  3:5025/1‑118                             TCAGGCCCTCGACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGC                                                                                                                                                             <  4:5025/118‑1                                                              GCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGG                                                                                                                                                         <  1:165766/89‑1                                                              GCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGG                                                                                                                                                         >  2:165766/1‑89                                                                           CAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGG                                                                                >  3:326330/1‑149                                                                             AGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGT                                                                                                                   >  8:214243/1‑112                                                                             AGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGT                                                                                                                   <  7:214243/112‑1                                                                                           CGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATC                                                                <  4:326330/149‑1                                                                                                                                                  CCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCC                      >  5:317255/1‑136                                                                                                                                                  CCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCC                      <  6:317255/136‑1                                                                                                                                                  CCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAA                                    >  5:273998/1‑122                                                                                                                                                  CCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAA                                    <  6:273998/122‑1                                                                                                                                                    AGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGC       <  1:329749/149‑1                                                                                                                                                      GGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAA     <  5:417125/149‑1                                                                                                                                                        CTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACG   >  3:121067/1‑149                                                                                                                                                         TTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGC  >  7:345825/1‑149                                                                                                                                                                                                                                                                                                               GTGATGCCCGCTTCGCGCAGGTAACGGGTCAGGCCCTCGACACCGCCATAGCCCCCGACCCGCACCTGGCATTGCAAGCCCTGGGGCACGCGGCCGATACCGGCCAGGCTGTAGACATGTCGAGGCCCGAGTTGGCGGGCCATCGCCAGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5499413‑5499260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggcttGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCACGCAACGC  >  NC_002947/5499339‑5499485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.