New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5627606 =	69 (1.080)	4 (0.070)	4/242	NT	6.3%	intergenic (‑105/+88)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase
	?	NC_002947	5627691 =	54 (0.890)					intergenic (‑190/+3)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase

TGGCCAAAGAGCTGGCACAGACCGCCGGTAGTTACCGCATGGACTGGCTGATCGCCGAGTAAGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5627755‑5627606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaGGCTTACTCGGCGATCAGCCAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGGCCAAGCCCGAACCATTCAGGCCCT  >  NC_002947/5627691‑5627836                                                                                                                                                                                                                                                                                                          TGGCCAAAGAGCTGGCACAGACCGCCGGTAGTTACCGCATGGACTGGCTGATCGCCGAGTAAGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTA                                                                                                                                                      >  2:359470/1‑148  GGCCAAAGAGCTGGCACAGACCGCCGGTAGTTACCGCATGGACTGGCTGATCGCCGAGTAAGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTA                                                                                                                                                      >  5:87393/1‑147  GGCCAAAGAGCTGGCACAGACCGCCGGTAGTTACCGCATGGACTGGCTGATCGCCGAGTAAGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTA                                                                                                                                                      <  6:87393/147‑1        AGAGCTGGCACAGACCGCCGGTAGTTACCGCATGGACTGGCTGATCGCCGAGTAAGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTA                                                                                                                                                      <  5:132083/141‑1        AGAGCTGGCACAGACCGCCGGTAGTTACCGCATGGACTGGCTGATCGCCGAGTAAGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTA                                                                                                                                                      >  6:132083/1‑141                                                              AGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAGGCTTACTCGGCGATCAGCCAGTCCATGCGGTAACTACCGGTGGTCTGT                                                                                                   >  1:10024/1‑138                                                              AGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAGGCTTACTCGGCGATCAGCCAGTCCATGCGGTAACTACCGGTGGTCTGT                                                                                                   <  2:10024/138‑1                                                                           GGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAGGCTTACTCGGCGATCAGCCAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGG                                                                            >  6:268742/1‑148                                                                                                                              CTTCGCGGGTGAACCCGCCCCTACAGGCTTACTCGGCGATCAGCCAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGG                          <  5:268742/147‑1                                                                                                                                                     CAGGCTTACTCGGCGATCAGCCAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGGCCAAGCCCGAACCATTCAGGCCCT  <  3:204654/148‑1                                                                                                                                                                                                                                                                                                          TGGCCAAAGAGCTGGCACAGACCGCCGGTAGTTACCGCATGGACTGGCTGATCGCCGAGTAAGCCTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5627755‑5627606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaGGCTTACTCGGCGATCAGCCAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGGCCAAGCCCGAACCATTCAGGCCCT  >  NC_002947/5627691‑5627836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.