New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5856285 =	60 (0.940)	4 (0.070)	4/238	NT	7.0%	coding (212/1392 nt)	PP_5133	membrane protein
	?	NC_002947	5856319 =	50 (0.830)					coding (246/1392 nt)	PP_5133	membrane protein

AGTAGCATCAGCAGGTTCAGCCCGAGCAGGCTGCCCAGCGCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5856438‑5856285 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctgctGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGGGCATGGGTTTTGCCCTGA  >  NC_002947/5856319‑5856464                                                                                                                                                                                                                                                                                                              AGTAGCATCAGCAGGTTCAGCCCGAGCAGGCTGCCCAGCGCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCC                                                                                                                                                         >  3:99781/1‑149     GCATCAGCAGGTTCAGCCCGAGCAGGCTGCCCAGCGCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGC                                                                                                                                                     <  4:248375/149‑1     GCATCAGCAGGTTCAGCCCGAGCAGGCTGCCCAGCGCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTG                                                                                                                                                      <  3:316190/148‑1      CATCAGCAGGTTCAGCCCGAGCAGGCTGCCCAGCGCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGCT                                                                                                                                                    <  4:99781/149‑1          AGCAGGTTCAGCCCGAGCAGGCTGCCCAGCTCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCC                                                                                                                                                         <  2:25164/140‑1          AGCAGGTTCAGCCCGAGCAGGCTGCCCAGCGCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCC                                                                                                                                                         >  1:25164/1‑140                                                                                                                    TCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCG                                                  <  1:63814/137‑1                                                                                                                    TCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCG                                                  >  2:63814/1‑137                                                                                                                        CAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGG                                                <  1:355562/135‑1                                                                                                                        CAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGCTGCTGATGGCCGTGCTAAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGG                                                >  2:355562/1‑135                                                                                                                                                   GCCCTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGGGCATGGGTTTTGC       >  1:152245/1‑149                                                                                                                                                     CCTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGG                    <  8:263668/134‑1                                                                                                                                                     CCTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGG                    >  7:263668/1‑134                                                                                                                                                      CTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTG                      >  7:175102/1‑131                                                                                                                                                      CTGCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTG                      <  8:175102/131‑1                                                                                                                                                        GCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGGGCATGGGTTTTGCCCT    >  1:230911/1‑147                                                                                                                                                        GCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGGGCATGGGTTTTGC       <  5:360448/144‑1                                                                                                                                                        GCTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGGGCATGGGTTTTGC       >  6:360448/1‑144                                                                                                                                                         CTGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGGGCATGGGTTTTGCCCTGA  <  4:14463/148‑1                                                                                                                                                                                                                                                                                                              AGTAGCATCAGCAGGTTCAGCCCGAGCAGGCTGCCCAGCGCCCAGAACACATTCACCGGGCGCTGCCCGTCACCGAGGGCGGCCAGCCCCAGGCCCGTGCCGCTGAGCACGGCCATCAGCAGCAGGGCCAGCAGCGCCAGACGCGCGCCCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5856438‑5856285 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctgctGCTGATGGCCGTGCTCAGCGGCACGGGCCTGGGGCTGGCCGCCCTCGGTGACGGGCAGCGCCCGGTGAATGTGTTCTGGGCGCTGGGCAGCCTGCTCGGGCTGAACCTGCTGATGCTACTTGGCTGGGGCATGGGTTTTGCCCTGA  >  NC_002947/5856319‑5856464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.