New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6060431 =	73 (1.140)	13 (0.230)	8/226	NT	16.4%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060518 =	68 (1.190)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein

GGGGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6060584‑6060431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTGCTT  >  NC_002947/6060518‑6060664                                                                                                                                                                                                                                                                                                               GGGGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCC                                                                                                                                                          >  8:105021/1‑149  GGGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCC                                                                                                                                                         <  3:321409/149‑1  GGGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCC                                                                                                                                                          >  1:10896/1‑148  GGGTTGATGAAATACCTGAAACCAAACAAGAACGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGGGGGAGCGGGCGTGCCCGCTAAACAAGCGACTCTGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCC                                                                                                                                                         <  2:38400/149‑1   GGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCA                                                                                                                                                        <  1:118464/149‑1   GGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCA                                                                                                                                                        >  3:137299/1‑149   GGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCA                                                                                                                                                        <  2:336478/149‑1    GTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCA                                                                                                                                                        >  1:296108/1‑148     TTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                      <  7:105021/149‑1                                                       GATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTT                                                                                                     >  8:218787/1‑148                                                       GATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTT                                                                                                     >  8:212881/1‑148                                                                              GGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAA                                                                             >  4:160054/1‑149                                                                                GCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACC                                                                           <  7:218787/149‑1                                                                                GCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACC                                                                           <  7:212881/149‑1                                                                                      CCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCA                                                                     >  2:259867/1‑149                                                                                      CCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCCCAGGTAAAGCGGCCTCATCCCCGTCGGGCGTCCGCCGGTCGTCGTTGGTTTCAGGTATTTCATCCCCCCCGGGACCCACAGCA                                                                     >  5:41752/1‑149                                                                                      CCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCA                                                                     >  7:5457/1‑149                                                                                            AACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCG                                                               >  3:299959/1‑149                                                                                                      GCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCC                                                     <  4:299959/149‑1                                                                                                            CATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGA                                                <  3:160054/148‑1                                                                                                                    CGGCGTCGCCGGTGTTCGCGGGCCAGCCCGCTCCCACAGTTAAAGCGTCATCATCCCCGTCGGGCGGCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGT                                       <  6:41752/149‑1                                                                                                                              GGTGTTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCT                              >  2:395161/1‑148                                                                                                                                              CCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAAC             <  5:109412/149‑1                                                                                                                                              CCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAAC             <  1:395161/149‑1                                                                                                                                               CCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACG            >  2:167301/1‑149                                                                                                                                                CGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGC           <  3:168717/149‑1                                                                                                                                                     CCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCT      >  6:102297/1‑149                                                                                                                                                      CACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTG     <  5:102297/149‑1                                                                                                                                                         AGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTGCTT  <  1:259867/149‑1                                                                                                                                                                                                                                                                                                               GGGGTTGATGAAATACCTGAAACCAAAGAAGAAAGGCTGAAGCCCGACGGGGATGATGACGCTTTACCTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6060584‑6060431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTGCTT  >  NC_002947/6060518‑6060664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.