New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6174781	69 (1.080)	6 (0.100)	5/246	NT	8.0%	coding (396/420 nt)	atpC	ATP synthase subunit epsilon
	?	NC_002947	= 6174809	72 (1.160)					coding (368/420 nt)	atpC	ATP synthase subunit epsilon

AGTGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6174631‑6174781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGC  <  NC_002947/6174809‑6174771                                                                                                                                                                                                 AGTGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCT                                           <  1:283754/149‑1   TGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACATAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACCAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTG                                          <  1:90134/149‑1   TGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGG                                         <  7:194403/149‑1                        CTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGC                    >  2:182789/1‑149                                        AGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAAT    <  1:182789/149‑1                                             GGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGC  <  3:152398/146‑1                                             GGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGC  >  4:152398/1‑146                                                          GAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGC  <  1:2480/133‑1                                                          GAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGC  >  2:2480/1‑133                                                                                                                                                                                                 AGTGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAA‑CAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6174631‑6174781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGC  <  NC_002947/6174809‑6174771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.