New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1114862 =	38 (0.590)	4 (0.070)	4/240	NT	9.0%	intergenic (‑56/+123)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114954 =	45 (0.740)					intergenic (‑148/+31)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase

CAGATCAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑CCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCG  >  NC_002947/1114717‑1115002                                                                                                                                                  |                                                                                                                                              ttcgtcgacaaggccccgcctgcggtgatcgagaaggaacgcgccaagctggccgagtccgaacaggccctggccaacttcaccgagcagcatgcgcggattgcagcgctgtaatcactagagagaccgttggggccgctgtacgGccc                                                                                                                                            <  7:208971‑M1/4‑1 (MQ=255)   cgtcgacaaggccccgcctgcggtgatcgagaaggaacgcgccaagctggccgagtccgaacaggccctggccaacttcaccgagcagcatgcgcggattgcagcgctgtaatcactagagagaccgttggggccgctgtacgGCCCt                                                                                                                                           >  1:70570‑M1/144‑148 (MQ=255)       aGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTCTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGc                                                                                                                                      <  4:98888/149‑1 (MQ=255)         ggTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGa                                                                                                                                    >  3:263095/1‑149 (MQ=255)          gTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGa                                                                                                                                    >  8:300493/1‑148 (MQ=255)                 ttGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGc                                                                                                                            >  2:142102/1‑149 (MQ=255)                        ggCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTccc                                                                                                                     >  4:142832/1‑149 (MQ=255)                        ggCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTcc                                                                                                                      >  6:89175/1‑148 (MQ=255)                                 aGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAggg                                                                                                            <  4:263095/149‑1 (MQ=255)                                         cGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGTGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCt                                                                                                    <  1:244970/149‑1 (MQ=255)                                          gACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCtt                                                                                                   <  7:300493/149‑1 (MQ=255)                                                     cGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGgcg                                                                                        <  3:142832/149‑1 (MQ=255)                                                                gTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTgg                                                                             >  7:55559/1‑149 (MQ=255)                                                                caggccctggccaacttcaccgagcagcatgcgcggattgcagcgctgtaatcactagagagaccgttggggccgctgtacgGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTgg                                                                             >  5:85101‑M1/83‑149 (MQ=255)                                                                     gggtgggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCg                                                                        <  1:142102/149‑1 (MQ=255)                                                                     cctggccaacttcaccgagcagcatgcgcggattgcagcgctgtaatcactagagagaccgttggggccgctgtacgGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCtgt                                                                               <  5:213954‑M1/65‑1 (MQ=255)                                                                     cctggccaacttcaccgagcagcatgcgcggattgcagcgctgtaatcactagagagaccgttggggccgctgtacgGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCtgt                                                                               >  6:213954‑M1/78‑142 (MQ=255)                                                                     cctggccaacttcaccgagcagcatgcgcggattgcagcgctgtaatcactagagagaccgttggggccgctgtacgGCCCTTTCGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCg                                                                        >  8:208971‑M1/78‑149 (MQ=255)                                                                         gggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAACGCCCCTCCCACAGGAGGGGGGCGGCTTGAACGTTGGCGCCGTCCAGTGGGAGCGGCCt                                                                    >  1:198248/1‑149 (MQ=255)                                                                          ggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCtt                                                                   >  8:306021/1‑149 (MQ=255)                                                                           gtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAgg                                                                                                                             <  1:142261/90‑1 (MQ=255)                                                                           gtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAgg                                                                                                                             >  2:142261/1‑90 (MQ=255)                                                                           gtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTtg                                                                  >  2:95905/1‑149 (MQ=255)                                                                            tttGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACagga                                                                                                               >  5:366300/1‑103 (MQ=255)                                                                            tttGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACagga                                                                                                               <  6:366300/103‑1 (MQ=255)                                                                            tttGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTtgt                                                                 >  8:146214/1‑149 (MQ=255)                                                                                ttCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTc                                                              <  8:55559/148‑1 (MQ=255)                                                                                 tCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGGGGGAGCGGCCTTGTGTcgc                                                            >  4:102017/1‑149 (MQ=255)                                                                                  cGGGGTCATGGCAGTGTCCAGCCCTTTACGAGCGGGGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTcgc                                                            <  8:234438/148‑1 (MQ=255)                                                                                  cGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTcgc                                                            >  5:215028/1‑148 (MQ=255)                                                                                   ggggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGtt                                                                                            >  5:24197/1‑115 (MQ=255)                                                                                   ggggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGtt                                                                                            <  6:24197/115‑1 (MQ=255)                                                                                     ggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGaaa                                                        <  6:215028/149‑1 (MQ=255)                                                                                          tGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑cc                                                  >  3:2645/1‑149 (MQ=255)                                                                                                     aGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑CCGTACAGCGGcc                                       >  2:7296/1‑149 (MQ=255)                                                                                                      gCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGgc                                                                                                        >  4:43482/1‑84 (MQ=255)                                                                                                      gCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGgc                                                                                                        <  3:43482/84‑1 (MQ=255)                                                                                                           ataCGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACCGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑CCGTACAGCGGCCCCAACg                                 <  7:146214/149‑1 (MQ=255)                                                                                                              cGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGaa                                                                                                <  7:12873/84‑1 (MQ=255)                                                                                                              cGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGaa                                                                                                >  8:12873/1‑84 (MQ=255)                                                                                                                         ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑CCGTACAGCGGCCCCAACGGTCTCTCTAGTGAt                   >  7:119880/1‑149 (MQ=255)                                                                                                                                 ccTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑CCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAgcgc           >  3:233830/1‑149 (MQ=255)                                                                                                                                          gctgcGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑CCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCcg  <  7:306021/149‑1 (MQ=255)                                                                                                                                           ctgcGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATcc   <  1:95905/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              CAGATCAGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑CCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCG  >  NC_002947/1114717‑1115002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.