| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1443104 = | 30 (0.470) | 4 (0.080) | 4/204 | NT | 17.4% | intergenic (‑42/+134) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator |
| ? | NC_002947 | 1443172 = | 14 (0.270) | intergenic (‑110/+66) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator | |||||
ATGTCGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAG > NC_002947/1442959‑1443252 | aTGTCGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCt < 2:125676/148‑1 (MQ=255) cgcaactcgctgccagagattcttgccgcgcatgaggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTcgcg < 6:44883‑M1/8‑1 (MQ=255) gctgccagagattcttgccgcgcatgaggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgtgggcggacaattgtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑Gcc > 2:6393‑M1/134‑149 (MQ=255) ggTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCt < 3:49781/149‑1 (MQ=255) ccagagattcttgccgcgcatgaggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑GCCCGc > 2:59054‑M1/130‑148 (MQ=255) ccagagattcttgccgcgcatgaggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑GCCCGc < 1:59054‑M1/19‑1 (MQ=255) agagattcttgccgcgcatgaggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCgg > 1:215121‑M1/128‑136 (MQ=255) agagattcttgccgcgcatgaggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCgg < 2:215121‑M1/9‑1 (MQ=255) gggCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCt < 7:67828/148‑1 (MQ=255) ggATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACgggg < 2:354576/149‑1 (MQ=255) aCGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGgcg > 7:254003/1‑149 (MQ=255) gTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACgggg > 6:229474/1‑142 (MQ=255) gTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACgggg < 5:229474/142‑1 (MQ=255) gTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGcgcg > 2:311566/1‑149 (MQ=255) gTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCCGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGgcgc > 1:400176/1‑148 (MQ=255) gTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCCGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGgcgc < 2:400176/148‑1 (MQ=255) ggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑Gcc < 8:189011‑M1/16‑1 (MQ=255) ggcagacctgaaaacccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑Gcc > 7:189011‑M1/107‑122 (MQ=255) gctgcAGGCGTTCGGCCATGGCGGGGGTGAGACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGGGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCATGTa < 4:286748/148‑1 (MQ=255) ctgcAGGCGTTCGGCCATGGCCGGGGTGATACGGCGGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAg < 1:308981/148‑1 (MQ=255) cAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGc < 5:63400/149‑1 (MQ=255) gtCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGGGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCtt < 7:339183/148‑1 (MQ=255) ccGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACCGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTg > 6:293435/2‑149 (MQ=255) ccATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCGACCGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCcg > 4:184962/1‑149 (MQ=255) cGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTc > 1:241957/1‑101 (MQ=255) cGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTc < 2:241957/101‑1 (MQ=255) gTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGcgg > 5:364034/1‑147 (MQ=255) cGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTg > 8:130320/1‑128 (MQ=255) cGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTg < 7:130320/128‑1 (MQ=255) taaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCggg > 1:21193‑M1/70‑123 (MQ=255) taaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCggg < 2:21193‑M1/54‑1 (MQ=255) tgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAg > 7:199455‑M1/62‑108 (MQ=255) tgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAg < 8:199455‑M1/47‑1 (MQ=255) aatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAA‑Gcc > 1:222028‑M1/56‑71 (MQ=255) tCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTa > 4:291959/1‑97 (MQ=255) tCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTa < 3:291959/97‑1 (MQ=255) tCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACCGGGGGGCGCGGTGGCTTGTATGAGCCGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATAAATGGTTatc > 8:43695/1‑146 (MQ=255) tttttCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAAc > 3:141084/1‑149 (MQ=255) ctCGGTCAACTGCCCTGCCGGGCGGGGGGGGGGGGGGGGGGCCCCTGCGCGGCCAC‑CCCCGCTCCCCCGGGGGGGCGCGGGGCGTTGTCGGCGGGGGGTGCCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCa < 2:285516/148‑1 (MQ=255) gggCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAg < 6:380779/87‑1 (MQ=255) gggCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAg > 5:380779/1‑87 (MQ=255) gCAGGGGGGGGGGGGGGTGTGGGGGCCCTTTCG‑GGGCAATGCCCGCGCTTCGGGGGGGGCGGGGTGCGTTTTTGGTGGGGGTTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCa < 2:25358/148‑1 (MQ=255) aaGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTAAGGGGGGGGGCGGTGCCTTGTAGGAGCGGGCTTGGCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTTTACGCCCCCGCATTg > 3:186673/1‑149 (MQ=39) gggCTGTGCGGGCCCCTGCGCGGCCAC‑CCCCCCTCCTCCGGGGGGGCGCGGGGCGTTGTTGGCGGGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCtttt < 1:311566/149‑1 (MQ=255) ggtGGGCCCTGCGCGGGCAA‑GCCGGCTCCTCGGGGGGGGGGGGGTGCTTTTTTGTTGGGGGGTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTgg < 4:141084/147‑1 (MQ=255) agctgTCCCTTCGCGGGCAC‑GCCCGCTCCTCCGGGGGGGCGCGGTGCCTTTTAGCAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTgg < 3:277305/145‑1 (MQ=255) CCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAg < 5:425536‑M1/149‑1 (MQ=255) | ATGTCGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA‑GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAG > NC_002947/1442959‑1443252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |