New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1675701 =	44 (0.690)	3 (0.050)	3/240	NT	7.0%	coding (868/1305 nt)	hom	homoserine dehydrogenase
	?	NC_002947	1675742 =	38 (0.630)					coding (909/1305 nt)	hom	homoserine dehydrogenase

GGTTACCGCATCAAGCACCTGGGCGTGGCGCGTCGCACCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCG  >  NC_002947/1675554‑1675841                                                                                                                                                    |                                                                                                                                             tgTTACCGCATCAATCACCTGGGCTTGGCGCGTCGCACCGCCGAAGGTATCGAGTTGCGAGTGCACCCGAAGCTTATCCCTGCCGACCGTCTGATCTCCAACGTCAACGGCGTGATTAACGCTGTCATGGTCAACGGTGATGCTGCCgg                                                                                                                                             <  4:328202/148‑1 (MQ=255) ggTTACCGCATCAAGCACCTGGGCGTGGCGCGTCGCACCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCgg                                                                                                                                             >  5:280042/1‑149 (MQ=255)   ttACCTCATCAAGCACCTGGGCGTGGAGCGTCGCACCGCCGAAGGTATCGAGTTGCGCGTTCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCgg                                                                                                                                             >  3:328202/1‑147 (MQ=255)      gctttcgcaggcttcgatcggcaggatcgggtgggccgacagcgagtctggctggaatgccaggtgcggcacacggttctccgggtcggaggtcatggcacggaccacgtcgaccaggtcgccgaccactgacgaagcggtaGGCTCCa                                                                                                                                        <  5:18487‑M1/7‑1 (MQ=255)         cATCAAGCACCTGGGCGTGGCGCGTCGCACCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCAccc                                                                                                                                     >  4:186499/1‑149 (MQ=255)              aGCACCTGGGCGTGGCGCGTCGCACCGCCGTAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGtac                                                                                                                                >  1:34580/1‑149 (MQ=255)                  ccTGGGCGTGGCGCGTCGCACCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACg                                                                                                                            <  6:280042/149‑1 (MQ=255)                     gggCGTGGCGCGTCGCACCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTg                                                                                                                         >  3:228894/1‑149 (MQ=255)                               cgTCGCACCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCggg                                                                                                               <  3:186499/149‑1 (MQ=255)                                     aCCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGa                                                                                                         <  4:194062/149‑1 (MQ=255)                                      ccgccgAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAg                                                                                                        <  4:203178/149‑1 (MQ=255)                                        gccgacagcgagtctggctggaatgccaggtgcggcacacggttctccgggtcggaggtcatggcacggaccacgtcgaccaggtcgccgaccactgacgaagcggtaGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGcc                                                                                                      >  7:108454‑M1/109‑149 (MQ=255)                                              agcgagtctggctggaatgccaggtgcggcacacggttctccgggtcggaggtcatggcacggaccacgtcgaccaggtcgccgaccactgacgaagcggtaGGCTCCa                                                                                                                                        >  4:168162‑M1/103‑109 (MQ=255)                                                  tCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGc                                                                                                                        >  6:32759/1‑121 (MQ=255)                                                  tCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTc                                                                                             <  2:34580/148‑1 (MQ=255)                                                    gAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTc                                                                                          >  7:368222/1‑149 (MQ=255)                                                      tggctggaatgccaggtgcggcgcacggttctccgggtcggaggtcatggcacggaccacgtcgaccaggtcgccgaccactgacgaagcggtaGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTAcc                                                                                                  <  6:250498‑M1/45‑1 (MQ=255)                                                      tggctggaatgccaggtgcggcgcacggttctccgggtcggaggtcatggcacggaccacgtcgaccaggtcgccgaccactgacgaagcggtaGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTAcc                                                                                                  >  5:250498‑M1/95‑139 (MQ=255)                                                      gTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAg                                                                                        <  4:228894/149‑1 (MQ=255)                                                                 aCCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGAc                                                                             >  2:104418/1‑149 (MQ=255)                                                                  cccGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGa                                                                                                         <  8:255270/120‑1 (MQ=255)                                                                  cccGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGAcc                                                                            <  3:198596/149‑1 (MQ=255)                                                                  cccGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGAAGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGa                                                                                                         >  7:255270/1‑120 (MQ=255)                                                                        gCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTc                                                                       >  5:61986/1‑148 (MQ=255)                                                                            aTCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGt                                                                  >  5:287941/1‑149 (MQ=255)                                                                                cGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGc                                                                                                       <  5:129062/108‑1 (MQ=255)                                                                                cGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGc                                                                                                       >  6:129062/1‑108 (MQ=255)                                                                                  gCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCg                                                            >  8:77593/1‑149 (MQ=255)                                                                                      aCCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGcc                                                        <  7:77593/149‑1 (MQ=255)                                                                                      aCCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGcc                                                        <  1:104418/149‑1 (MQ=255)                                                                                             gATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTg                                                                 <  4:406207/133‑1 (MQ=255)                                                                                             gATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTg                                                                 >  3:406207/1‑133 (MQ=255)                                                                                                 gCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGgcgc                                                                                                                  >  1:252506/1‑80 (MQ=255)                                                                                                 gCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGgcgc                                                                                                                  <  2:252506/80‑1 (MQ=255)                                                                                                  ccAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTg                                                                          >  8:241175/1‑119 (MQ=255)                                                                                                  ccAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTg                                                                          <  7:241175/119‑1 (MQ=255)                                                                                                       gTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCg                                         >  7:259887/1‑147 (MQ=255)                                                                                                         cAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGgag                                      >  5:350972/1‑148 (MQ=255)                                                                                                            cGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAAcc                                  <  6:61986/149‑1 (MQ=255)                                                                                                                 tgatgaACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGtgtg                             <  6:287941/149‑1 (MQ=255)                                                                                                                  gatgaACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGc                            >  8:89573/1‑149 (MQ=255)                                                                                                                   aggaACGGTGTCATGGTCACCGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGcc                           <  8:368222/147‑1 (MQ=255)                                                                                                                     gaACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCg                          >  6:207949/1‑148 (MQ=255)                                                                                                                          cTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTg                    <  6:350972/149‑1 (MQ=255)                                                                                                                           tGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTgg                   >  3:288367/1‑149 (MQ=255)                                                                                                                             tCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTgg                   <  5:207949/147‑1 (MQ=255)                                                                                                                              cATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCg                          >  5:171613/1‑139 (MQ=255)                                                                                                                              cATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCg                          <  6:171613/139‑1 (MQ=255)                                                                                                                                   tCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAAcc                                  <  8:219214/126‑1 (MQ=255)                                                                                                                                   tCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAAcc                                  >  7:219214/1‑126 (MQ=255)                                                                                                                                    cAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTccagc          >  8:272253/1‑149 (MQ=255)                                                                                                                                            ttgctgcCGGCTCCACCTTGTTTTTGTGTGCTTGCGCGTGTTTGGTGCCTACCTTTTCGTCTGTGGTCTGCTACCTGGTCGACGTGTTCAGGGCCATGACCTCCGACCCGGAGAATTGTGTGCCTCACCTGGTATTTCAGCCAGACTCg  <  8:259887/148‑1 (MQ=255)                                                                                                                                                tgcCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGa                                                                                                         >  8:168280/1‑42 (MQ=255)                                                                                                                                                tgcCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGa                                                                                                         <  7:168280/42‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             GGTTACCGCATCAAGCACCTGGGCGTGGCGCGTCGCACCGCCGAAGGTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCG  >  NC_002947/1675554‑1675841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.