New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2085435	59 (0.920)	5 (0.080)	4/238	NT	10.2%	intergenic (+144/‑451)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2087757	33 (0.550)					intergenic (+570/+348)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase

TGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTA  >  NC_002947/2085289‑2085582                                                                                                                                                   |                                                                                                                                                    tGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTTGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCg                                                                                                                                                    >  2:221250/1‑148 (MQ=255)      ccAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggaggga                                                                                                                                              <  6:92262/149‑1 (MQ=255)       cAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGGTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCTGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGGTTTCggagggag                                                                                                                                             >  5:352295/1‑149 (MQ=255)       cAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggagggag                                                                                                                                             <  4:279991/149‑1 (MQ=255)              ggCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggagggag                                                                                                                                             >  4:226479/1‑142 (MQ=255)              ggCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggagggag                                                                                                                                             <  3:226479/142‑1 (MQ=255)               gCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTATAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCACGGCTTGCGGAGGGAGGTGACggt                                                                                                                                     >  5:223662/1‑148 (MQ=255)                 aGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCa                                                                                                                                   >  3:164856/1‑149 (MQ=255)                     gCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCAtcc                                                                                                                                <  4:164856/148‑3 (MQ=255)                       ttCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATg                                                                                                                             >  7:163613/1‑149 (MQ=255)                         cTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATg                                                                                                                             <  3:371915/147‑1 (MQ=255)                            cTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggagggaggaccgcgctgcaggccccatc                                                                                                                        >  7:267569‑M1/1‑120 (MQ=255)                            cTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCg                                                                                                                         >  3:4869/1‑148 (MQ=255)                                          tctgcttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGccc                                                                                                          >  8:158394/1‑149 (MQ=255)                                              cttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCtcccgggaggaccgcgctgcaggccccatcctggggcccagcgctt                                                                                                       >  8:121455‑M1/1‑102 (MQ=255)                                               ttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGt                                                                                                                        <  1:345424/130‑1 (MQ=255)                                               ttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGt                                                                                                                        >  2:345424/1‑130 (MQ=255)                                               ttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATCCATGCCCGTCacct                                                                                                                   <  2:345957/135‑4 (MQ=255)                                                 ctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCtcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgac                                                                                                    <  7:121455‑M1/148‑50 (MQ=255)                                                      tctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGcc                                                                                              >  3:8074/1‑149 (MQ=38)                                                        tgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGccc                                                                                                                          >  1:166786/1‑119 (MQ=39)                                                        tgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGccc                                                                                                                          <  2:166786/119‑1 (MQ=39)                                                          cttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCATCCTGGGGccca                                                                                            <  2:53106/147‑3 (MQ=255)                                                           ttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAg                                                                                         >  5:105601/1‑149 (MQ=34)                                                             ctgctCTTGCTTTGGCGTTTGCTTCTAAGCGCGCGGACGTTCCGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGC‑AGGCCCCATCCTGGGGcccagcgct                                                                                       <  8:163613/148‑8 (MQ=11)                                                                ctctTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGAt                                                                                                    <  3:349437/133‑1 (MQ=32)                                                                ctctTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGAt                                                                                                    >  4:349437/1‑133 (MQ=32)                                                                ctctTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGcgcg                                                                                     <  1:221250/148‑1 (MQ=32)                                                                  ctTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtc                                                                                  >  5:48656/1‑149 (MQ=32)                                                                   ttGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtc                                                                                  >  8:174017/1‑148 (MQ=32)                                                                     gCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCggagggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccatcacct                                                                                <  8:267569‑M1/148‑70 (MQ=255)                                                                     gCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctc                                                                               >  3:176924/1‑149 (MQ=32)                                                                      cTTTTGATTTTGCTTCTAAGCGCGCGATAGCCCAGGCGCCGCGGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCtcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctc                                                                              <  1:319769‑M1/149‑72 (MQ=255)                                                                      cTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctcc                                                                              >  5:73057/1‑149 (MQ=32)                                                                      cTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctcc                                                                              >  2:54014/1‑149 (MQ=32)                                                                       tttGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTc                                                                                                                       >  4:220060/1‑107 (MQ=32)                                                                       tttGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTc                                                                                                                       <  3:220060/107‑1 (MQ=32)                                                                          ggCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg                                                                           <  2:365765/148‑1 (MQ=32)                                                                             ttttGCTTCTAAGCGCGAGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCAAGGATGGGGCCTGCAGAGCGGTCCTCCCGGGAg                                                                        >  5:407424/1‑148 (MQ=12)                                                                               ttGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctc                                                                               >  6:271032/1‑139 (MQ=32)                                                                               ttGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctc                                                                               <  5:271032/139‑1 (MQ=32)                                                                                tGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCgga                                                                                                                                                  >  5:346200/1‑71 (MQ=34)                                                                                tGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCgga                                                                                                                                                  <  6:346200/71‑1 (MQ=34)                                                                                   ttCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGt                                                                                   <  6:335086/131‑1 (MQ=32)                                                                                   ttCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGt                                                                                   >  5:335086/1‑131 (MQ=32)                                                                                   ttCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc                                                                 >  3:95267/1‑149 (MQ=32)                                                                                      tAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGa                                                              <  4:8074/149‑1 (MQ=32)                                                                                      tAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAAGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCg                                                                >  7:24593/1‑147 (MQ=17)                                                                                       aaGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGc                                                                                                                            <  1:324350/86‑1 (MQ=33)                                                                                       aaGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGc                                                                                                                            >  2:324350/1‑86 (MQ=33)                                                                                         gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGCCGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGt                                                            >  8:378361/1‑148 (MQ=17)                                                                                         gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTg                                                           >  8:383817/1‑149 (MQ=32)                                                                                           gcgcgGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAg                                                         <  7:174017/149‑1 (MQ=32)                                                                                             gctgTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGACTGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAggg                                                       <  7:158394/146‑1 (MQ=12)                                                                                                    ttCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAgc                                                                                                                   <  5:245899/82‑1 (MQ=33)                                                                                                       aGGCGATGCTGATTGGGACTTCTGGAGGCCGAGCGCAGGGCTTGCGGTGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCGTGCAGGGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGa                                              <  4:176924/148‑1 (MQ=11)                                                                                                         gCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATTCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg                                                                           <  4:282485/117‑1 (MQ=17)                                                                                                         gCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg                                                                           >  3:282485/1‑117 (MQ=32)                                                                                                           gATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcg                                           >  1:166165/1‑147 (MQ=32)                                                                                                           gATGCAGATTGCGACTTCAAGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcgta                                         <  8:24593/149‑1 (MQ=17)                                                                                                                              ggaggCCGAGCGCTGGGCTTGGGGAGGGAGGTGACGGTCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAgg                      <  6:407424/149‑1 (MQ=9)                                                                                                                               gaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAg                       <  4:95267/147‑1 (MQ=11)                                                                                                                                    cGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGgagatcg                >  3:173083/1‑146 (MQ=14)                                                                                                                                       gctcAGGGCGTGGGGACGGTGGGGACGGGAATGGACGCCCGTCAAGCGGTGGGCCCCAGGAGGGGGCCTGAAGCGCGGCCCTCCCGGGAGCATGCCCGGAGTGAGGGTACCCCGGAGCTTCGCGTAGGGGCCGGATGAGGGGAGCCGAc             <  6:352295/146‑1 (MQ=255)                                                                                                                                           aGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCt         >  5:84806/1‑149 (MQ=33)                                                                                                                                            gggCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCtt        <  1:54014/149‑1 (MQ=34)                                                                                                                                             gggttGGGGTGGGAGGTGTCGGGCATGGATGCCCGTCAAGGGGTGGGCCCCAGGATGGGGCCGGCAGCGCGGTCCTCCCGGGTGCAAGCCGGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCttt       <  6:73057/146‑1 (MQ=11)                                                                                                                                             ggCTTGCtcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcctgaagtctcaatctgcgtcgcctgaactaccgcgcgcttagaag       <  1:227565‑M1/149‑143 (MQ=255)                                                                                                                                             ggCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCttt       >  6:157402/1‑149 (MQ=34)                                                                                                                                              gCTTGCtcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgcttagaagc      <  8:34180‑M1/149‑144 (MQ=255)                                                                                                                                               cTTGCtcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcct                                                  <  1:407445‑M1/104‑100 (MQ=255)                                                                                                                                               cTTGCtcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcct                                                  >  2:407445‑M1/1‑5 (MQ=255)                                                                                                                                                   ctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgcttagaagcaaaa  <  5:391140‑M1/148‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTA  >  NC_002947/2085289‑2085582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.