New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2792732	44 (0.690)	4 (0.060)	4/246	NT	7.7%	coding (62/240 nt)	PP_5524	hypothetical protein
	?	NC_002947	= 2792790	53 (0.860)					coding (120/240 nt)	PP_5524	hypothetical protein

ATACGAATTTTCCTGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGC  >  NC_002947/2792584‑2792879                                                                                                                                                     |                                                                                                                                                     aTACGAATTTTCCTGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGC                                                                                                                                                      <  7:263998‑M1/149‑1 (MQ=255) aTACGAATTTTCCTGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGC                                                                                                                                                      <  2:385178‑M1/149‑1 (MQ=255)     gAATTTTCCTGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGc                                                                                                                                                  >  8:87863/1‑149 (MQ=255)       aTTTTCCTGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTg                                                                                                                                                <  2:18374/149‑1 (MQ=255)       aTTTTCCTGAACTATTGCCGTCTTTAGAATGCACGGCCATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTg                                                                                                                                                >  7:224693/1‑149 (MQ=255)           tCCTGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGa                                                                                                                                             <  3:306007/148‑1 (MQ=255)              tGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAg                                                                                                                                         >  7:185182/1‑149 (MQ=255)                     ttGCCGTCTTTAGAATGCACGGCCATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCga                                                                                                                                    <  8:224693/147‑1 (MQ=255)                       gCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCcgactgcgcggcctgatcgag                                                                                                                                 >  7:121177‑M1/1‑127 (MQ=255)                       gCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGAGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGaa                                                                                                                                 <  5:198717/148‑1 (MQ=255)                             tttAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCgaga                                                                                                                                  <  5:65117/141‑1 (MQ=255)                             tttAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCgaga                                                                                                                                  >  6:65117/1‑141 (MQ=255)                                aGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCgcag                                                                                                                       >  1:205038/1‑149 (MQ=255)                                   aTGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCgcagca                                                                                                                     <  2:205038/148‑1 (MQ=255)                                        cGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCt                                                                                                               <  2:249428/149‑1 (MQ=255)                                            tATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCcgactgcgcggcctgatcgagcatctgctgcgcggatttctcg                                                                                                           >  1:297298‑M1/1‑106 (MQ=255)                                             aTCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAt                                                                                                           >  8:163008/1‑148 (MQ=255)                                                aGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAgg                                                                                                      <  8:134085/149‑1 (MQ=255)                                                          cgccgcCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTc                                                                                            <  5:86178/149‑1 (MQ=255)                                                                 gggTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCcgactgcgcggcctgatcgagcatctgctgcgcggatttctcggcctggtcgcagcctgccagg                                                                                      <  2:297298‑M1/149‑65 (MQ=255)                                                                  ggTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCcaagc                                                                                    <  7:87863/149‑1 (MQ=255)                                                                   gTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCcaagc                                                                                    >  3:76268/1‑148 (MQ=255)                                                                   gTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCcaagc                                                                                    >  2:101934/1‑148 (MQ=255)                                                                        ttCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCa                                                                              >  5:378511/1‑149 (MQ=255)                                                                          cAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCcgactgcgcggcctgatcgagcatctgctgcgcggatttctcggcctggtcgcagcctgccagggtgaacag                                                                              <  8:121177‑M1/148‑73 (MQ=255)                                                                           aaGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATc                                                                            <  7:163008/148‑1 (MQ=255)                                                                            aGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATcga                                                                          <  4:76268/149‑1 (MQ=255)                                                                                       cATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACcaac                                                                >  4:62324/1‑148 (MQ=255)                                                                                        aTGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACcaacaa                                                              <  1:253085/149‑1 (MQ=255)                                                                                             gcAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTg                                                         >  5:51556/1‑149 (MQ=255)                                                                                              cAACTCAAATCCATAGGCACGCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCt                                                          <  8:185182/147‑1 (MQ=255)                                                                                                  tCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGacac                                                                    <  8:15908/133‑1 (MQ=255)                                                                                                  tCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGacac                                                                    >  7:15908/1‑133 (MQ=255)                                                                                                  tCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAgg                                                            <  7:49456/141‑1 (MQ=255)                                                                                                  tCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAgg                                                            >  8:49456/1‑141 (MQ=255)                                                                                                  tCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCcag                                                    >  6:320412/1‑149 (MQ=255)                                                                                                    aaaTCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCCTGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCca                                                     <  1:101934/147‑1 (MQ=255)                                                                                                    aaaTCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATcgac                                                                         >  7:385886/1‑126 (MQ=255)                                                                                                    aaaTCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATcgac                                                                         <  8:385886/126‑1 (MQ=255)                                                                                                         cATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGgcgc                                             >  6:158902/1‑149 (MQ=255)                                                                                                         cATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGgcgc                                             >  3:63325/1‑149 (MQ=255)                                                                                                         cATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGgcgc                                             >  5:283692/1‑149 (MQ=255)                                                                                                                  cccGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAg                                    >  4:20649/1‑149 (MQ=255)                                                                                                                                cTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGaa                      <  6:378511/149‑1 (MQ=255)                                                                                                                                 tttGGCCATGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGAGCAGCAGATGCTCGCT‑CAGGCCGCTCCGTCGGCCAAGAAAGCCATCGACGACACCAACACGGATGACCAGCCGGCGCTGAGCGAAGCCATCGGCAGctact                     >  4:28362/1‑145 (MQ=255)                                                                                                                                    ggCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAggg                   <  4:63325/148‑1 (MQ=255)                                                                                                                                     gCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAggg                   >  3:7113/1‑147 (MQ=255)                                                                                                                                      cccTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCAGCGGCAGCGAAggg                   >  6:290360/1‑146 (MQ=255)                                                                                                                                        cTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGgccagggtgaacagggccaaagccagcaccaacggggtgcctatggatttgagttgcagcatggtgtcctcgcttg               <  8:121177‑M2/148‑77 (MQ=255)                                                                                                                                               cccTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAg       >  3:308443/1‑149 (MQ=255)                                                                                                                                               cccTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAg       <  5:158902/149‑1 (MQ=255)                                                                                                                                                ccTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGgccagggtgaacagggccaaagccagcaccaacggggtgcctatggatttgagttgcagcatggtgtcctcgcttgaaataaccc      <  2:297298‑M2/149‑86 (MQ=255)                                                                                                                                                ccTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAg       >  7:79869/1‑148 (MQ=255)                                                                                                                                                    gCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGc  <  6:51556/149‑1 (MQ=255)                                                                                                                                                    gCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGc  <  3:20649/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ATACGAATTTTCCTGAACTATTGCCGTCTTTAGAATGCACGGCTATCAGGCGCCATGCGCCGCCGGGTTATTTCAAGCGAGGACACCATGCTGCAACTCAAATCCATAGGCACCCCGTTGGTGCTGGCTTTGGCCCTGTTCACCCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGAT‑CAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGC  >  NC_002947/2792584‑2792879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.