New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3030422 =	64 (1.000)	6 (0.100)	4/240	NT	8.9%	intergenic (+422/‑272)	pcaY/mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
	?	NC_002947	3030465 =	62 (1.030)					intergenic (+465/‑229)	pcaY/mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter

TGGCCGGTTGGAGGCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCA  >  NC_002947/3030281‑3030567                                                                                                                                                |                                                                                                                                                  tGGCCGGTTGGAGGCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGt                                                                                                                                            >  7:53848/1‑149 (MQ=255)   tgtcggcagcgaactttctactcgcgcaatccatggtttgattccttttcataaacacagggaaatagttatcccgcgaacttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCgggg                                                                                                                                             >  2:388751‑M1/142‑148 (MQ=255)   gCCGGTTGGAGGCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGc                                                                                                                                          <  3:146746/149‑1 (MQ=255)     cGGTTGGAGGCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCGCAACTACTTGGGGGGTGCTg                                                                                                                                        <  5:70243/149‑1 (MQ=255)       gTTGGAGGCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGgc                                                                                                                                      <  7:115669/149‑1 (MQ=255)        ttGGAGGCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGgcg                                                                                                                                     >  1:211525/1‑149 (MQ=255)              gCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCACCCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCt                                                                                                                                <  1:244724/149‑1 (MQ=255)              gCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGgcg                                                                                                                                     >  8:84476/1‑143 (MQ=255)              gCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGgcg                                                                                                                                     <  7:84476/143‑1 (MQ=255)                 aGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCC‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCAt                                                                                                                            <  1:2246/149‑1 (MQ=255)                   cTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGc                                                                                                                          <  1:360350/149‑1 (MQ=255)                      aTGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCg                                                                                                                                                <  3:275354/124‑1 (MQ=255)                      aTGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCg                                                                                                                                                >  4:275354/1‑124 (MQ=255)                      aTGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACg                                                                                                                       >  6:207426/1‑149 (MQ=255)                             tCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGc                                                                                                                >  7:37511/1‑149 (MQ=255)                               aCTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGccc                                                                                                              >  4:398815/1‑149 (MQ=255)                                   cATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCg                                                                                                           >  2:297569/1‑148 (MQ=255)                                        gTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTtc                                                                                                     >  8:203395/1‑149 (MQ=255)                                        gTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTtc                                                                                                     >  5:9555/1‑149 (MQ=255)                                            cacaTCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCa                                                                                                  <  6:9555/148‑1 (MQ=255)                                             acaTCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACt                                                                                                >  5:390381/1‑149 (MQ=255)                                             acaTCGCCAGCCTGAGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTATGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACt                                                                                                >  4:87535/1‑149 (MQ=255)                                               aTCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGa                                                                                              <  8:37511/149‑1 (MQ=255)                                                tCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGaa                                                                                             >  5:76839/1‑149 (MQ=255)                                                   ccAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTc                                                                                                                              <  2:259690/113‑1 (MQ=255)                                                   ccAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCActc                                                                                                                      <  1:269516/121‑3 (MQ=255)                                                   ccAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCAcac                                                                                                                      >  2:269516/1‑119 (MQ=255)                                                     aGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATaaaa                                                                                        <  6:390381/149‑1 (MQ=255)                                                     aGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATaaa                                                                                         >  4:288637/1‑148 (MQ=255)                                                      taaacacagggaaatagttatcccgcgaacttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCgggg                                                                                                                                             <  8:373227‑M1/7‑1 (MQ=255)                                                      taaacacagggaaatagttatcccgcgaacttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCgggg                                                                                                                                             >  7:373227‑M1/91‑97 (MQ=255)                                                       ccTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGa                                                                                      <  6:76839/149‑1 (MQ=255)                                                           cGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATAtt                                                                                  <  1:297569/149‑1 (MQ=255)                                                             tGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTg                                                                                 >  1:145167/1‑148 (MQ=255)                                                             agggaaatagttatcccgcgaacttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCg                                                                                                           >  3:345008‑M1/84‑124 (MQ=255)                                                             agggaaatagttatcccgcgaacttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCg                                                                                                           >  3:339401‑M1/84‑124 (MQ=255)                                                             agggaaatagttatcccgcgaacttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCg                                                                                                           <  4:339401‑M1/41‑1 (MQ=255)                                                             agggaaatagttatcccgcgaacttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCg                                                                                                           <  4:345008‑M1/41‑1 (MQ=255)                                                                cTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCAc                                                                                                 <  6:405740/129‑1 (MQ=255)                                                                cTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCAc                                                                                                 >  5:405740/1‑129 (MQ=255)                                                                   gcgcCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGt                                                                           <  2:211525/148‑1 (MQ=255)                                                                      ccgcGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAAt                                                                                            <  8:189897/128‑1 (MQ=255)                                                                      ccgcGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAAt                                                                                            >  7:189897/1‑128 (MQ=255)                                                                      ccgcGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCt                                                                       <  3:398815/149‑1 (MQ=255)                                                                       cgcgGCCAGGCGCGGGCCT‑GCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGat                                                                                     >  1:152372/1‑134 (MQ=255)                                                                       cgcgGCCAGGCGCGGGCCT‑GCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGat                                                                                     <  2:152372/134‑1 (MQ=255)                                                                                gCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTc                                                               >  7:273380/1‑148 (MQ=255)                                                                                gCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTc                                                               <  8:273380/148‑1 (MQ=255)                                                                                   cgcgCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCGCAACTACTTGGGGGGTGCTggt                                                                                                                                      <  2:299822/74‑2 (MQ=25)                                                                                   cgcgCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCGCAACTACTTGGGGGGTGCTggt                                                                                                                                      >  1:299822/1‑73 (MQ=25)                                                                                    ttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCa                                                                                                         <  1:97339‑M1/43‑1 (MQ=255)                                                                                    ttttaacatgaaaagttcgagtacaaagataccgttcaatatcttttattcagtgagaagTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCa                                                                                                         >  2:97339‑M1/61‑103 (MQ=255)                                                                                        cTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGt                                                                           >  8:97740/1‑128 (MQ=255)                                                                                                 gcgTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTaaaa                                             <  7:93103/149‑1 (MQ=255)                                                                                                      tGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTcg                                        >  6:107167/1‑149 (MQ=255)                                                                                                      tGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTcg                                        >  2:39766/1‑149 (MQ=255)                                                                                                        cACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTAACATGAAAAGTTcga                                       <  2:145167/148‑2 (MQ=255)                                                                                                                ccTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTa                                                                  >  3:342026/1‑113 (MQ=255)                                                                                                                ccTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTa                                                                  <  4:342026/113‑1 (MQ=255)                                                                                                                ccTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACt                              >  1:193736/1‑149 (MQ=255)                                                                                                                          caccaTCA‑CCCCCCAAGTAGTTGCTGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCtgt                    <  3:87535/149‑1 (MQ=255)                                                                                                                          caccaGCC‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCtgt                    <  7:203395/149‑1 (MQ=255)                                                                                                                             caGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGCGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCt                      >  5:201793/1‑144 (MQ=255)                                                                                                                             caGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCt                      <  6:201793/144‑1 (MQ=255)                                                                                                                               gCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTg                                                                    >  3:231984/1‑96 (MQ=255)                                                                                                                               gCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTg                                                                    <  4:231984/96‑1 (MQ=255)                                                                                                                               gCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCt                      >  3:3014/1‑142 (MQ=255)                                                                                                                               gCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCt                      <  4:3014/142‑1 (MQ=255)                                                                                                                               gCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTa               <  3:288637/149‑1 (MQ=255)                                                                                                                                cA‑CCCCGCAACTACTTGGGGGGTGCTGGTGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGa                                   >  7:240693/1‑128 (MQ=255)                                                                                                                                cA‑CCCCGCAACTACTTGGGGGGTGCTGGTGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGa                                   <  8:240693/128‑1 (MQ=255)                                                                                                                                     ccccAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTAt              >  7:357974/1‑145 (MQ=255)                                                                                                                                     ccccAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTAt              <  8:357974/145‑1 (MQ=255)                                                                                                                                      cccAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGaa           >  7:125738/1‑147 (MQ=255)                                                                                                                                         aaGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAgg       >  3:19565/1‑148 (MQ=255)                                                                                                                                           gtagtTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAAt    <  5:207426/149‑1 (MQ=255)                                                                                                                                             agtTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATc   >  8:71842/1‑148 (MQ=255)                                                                                                                                              gtTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGATCGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCa  <  8:125738/148‑1 (MQ=255)                                                                                                                                              gtTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCa  >  1:196860/1‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                  TGGCCGGTTGGAGGCAAGCTCATGAACCTCACTTCATTCGTTTCACATCGCCAGCCTGCGTGCCTTGCGCCGCGG‑CAGGCCCGCGCCTGGCCGCGGCGTCTGCACGGCTACCTTGACCACCACCAGCA‑CCCCCCAAGTAGTTGCGGGGTGCTGGCGCGTCTTCATGCACGCTTGAGCCCCCGCACTTCTCACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCA  >  NC_002947/3030281‑3030567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.