New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3094220 =	36 (0.560)	3 (0.050)	3/240	NT	6.9%	intergenic (‑135/‑239)	PP_2702/PP_2703	porin/MFS transporter
	?	NC_002947	3094272 =	47 (0.780)					intergenic (‑187/‑187)	PP_2702/PP_2703	porin/MFS transporter

TGCGAGTGTTCATTCACGACTCCAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTGGCCAACGATCGCGCCGGCAAATTGC  >  NC_002947/3094073‑3094365                                                                                                                                                    |                                                                                                                                                  agccaatcgggcacccaatacacttgcagtttcggcatagggataaccaatgagcaatttgccggcgcgatcgttggccaaattgccctgagctggcgcacagtccgccctcgctccgcgcgcggccccaataacgcccacagatcaGc                                                                                                                                                  >  4:83315‑M1/148‑149 (MQ=255) agccaatcgggcacccaatacacttgcagtttcggcatagggataacaaatgagcaatttgccggcgcgatctttggccaaattgccctgagctggagaacagtccgacctcgctcagcgagcgggcccaataacgcacacagatcag                                                                                                                                                   <  7:187060‑M1/1‑1 (MQ=255)  gccaatcgggcacccaatacacttgcagtttcggcatagggataaccaatgagcaatttgccggcgcgatcgttggccaaattgccctgagctggcgcacagtccgccctcgctccgcgcgcggccccaataacgcccacagatcaGCa                                                                                                                                                 <  1:258011‑M1/3‑1 (MQ=255)            attcaCGACTCCAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGt                                                                                                                                          >  8:274541/1‑146 (MQ=255)                aCGACTCCAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAg                                                                                                                                   >  1:133132/1‑149 (MQ=255)                  gACTCCAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGc                                                                                                                                 <  1:277706/149‑1 (MQ=255)                       cAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGt                                                                                                                                          <  4:180431/135‑1 (MQ=255)                       cAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGt                                                                                                                                          >  3:180431/1‑135 (MQ=255)                       cAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGa                                                                                                                                      <  1:18246/139‑1 (MQ=255)                       cAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGa                                                                                                                                      >  2:18246/1‑139 (MQ=255)                            cAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCAt                                                                                                                                                <  8:285666/124‑1 (MQ=255)                            agtttcggcatagggataaccaatgagcaatttgccggcgcgatcgttggccaaattgccctgagctggcgcacagtccgccctcgctccgcgcgcggccccaataacgcccacagatcaGc                                                                                                                                                  >  1:214738‑M1/121‑122 (MQ=255)                            agtttcggcatagggataaccaatgagcaatttgccggcgcgatcgttggccaaattgccctgagctggcgcacagtccgccctcgctccgcgcgcggccccaataacgcccacagatcaGc                                                                                                                                                  <  2:214738‑M1/2‑1 (MQ=255)                               cACGGTGATGTGGTGTCTTTAGCGTCTGTGAACAGTACGTTGCAGCGTGATTGGTTATTCGGTCAGGTCATGCCGTTTGGTTAATGAGGGTCTGGCGCTGCGTTTGGATTGGCGATCTCATCCGCGTTAGACAGTCTTCGTACCCgcgc                                                                                                                    <  4:100580/149‑1 (MQ=255)                               cACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCgcgc                                                                                                                    <  2:134512/149‑1 (MQ=255)                                       tgtgGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTg                                                                                                            <  3:4119/149‑1 (MQ=255)                                                    gCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGc                                                                                                <  8:65542/148‑1 (MQ=255)                                                     cGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTg                                                                                              <  7:274541/149‑1 (MQ=255)                                                       caatttgccggcgcgatcgttggccaaattgccctgagctggcgcacagtccgccctcgctccgcgcgcggccccaataacgcccacagatcaGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGAt                                                                                            >  1:94717‑M1/94‑149 (MQ=255)                                                               cAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGc                                                                                    <  2:133132/149‑1 (MQ=255)                                                                 gcgcgatcgttggccaaattgccctgagctggcgcacagtccgccctcgctccgcgcgcggccccaataacgcccacagatcaGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTg                                                                                              <  8:339364‑M1/54‑1 (MQ=255)                                                                 gcgcgatcgttggccaaattgccctgagctggcgcacagtccgccctcgctccgcgcgcggccccaataacgcccacagatcaGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTg                                                                                              >  7:339364‑M1/84‑137 (MQ=255)                                                                     gTTTCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACTGATGCTGATCTGTGGGCGTTAtt                                                                              <  2:105899/149‑1 (MQ=255)                                                                                aTTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCcgcgcg                                                                   >  2:169153/1‑149 (MQ=255)                                                                                   gCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCcgcgcgcg                                                                 >  7:56109/1‑148 (MQ=255)                                                                                     ttATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCtgtg                                                                                       <  2:166549/124‑1 (MQ=255)                                                                                     ttATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCtgtg                                                                                       >  1:166549/1‑124 (MQ=255)                                                                                     ttATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGTCGCGCGCGGAg                                                              >  3:315831/1‑149 (MQ=255)                                                                                            gtcaggtcaTGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGc                                                       >  7:364937/1‑149 (MQ=255)                                                                                             tcaggtcaTGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCg                                                      >  3:126850/1‑149 (MQ=255)                                                                                               aggtcaTGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCg                                                      >  8:336118/1‑147 (MQ=255)                                                                                               aggtcaTGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCg                                                      <  7:336118/147‑1 (MQ=255)                                                                                                         gTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTgggg                                                                          >  8:264745/1‑117 (MQ=255)                                                                                                         gTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTgggg                                                                          <  7:264745/117‑1 (MQ=255)                                                                                                                tAATCAGGGGCTGGCGCGGCGTGTGGATTGGTGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTc                                      <  6:422433/146‑1 (MQ=255)                                                                                                                tAATCAGGGGCTGGCGCGGCGTGTGGATTGGTGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTc                                      >  5:422433/1‑146 (MQ=255)                                                                                                                tAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAgg                                   >  6:138516/1‑149 (MQ=255)                                                                                                                  aTCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGc                                 <  8:364937/149‑1 (MQ=255)                                                                                                                   tCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGc                                 >  2:258011/1‑148 (MQ=255)                                                                                                                     aGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAAt                              >  2:187074/1‑149 (MQ=255)                                                                                                                       gggCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAAttt                            >  6:125130/1‑149 (MQ=255)                                                                                                                        ggCTGTCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGTCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGTGCAATTTg                           <  4:315831/149‑1 (MQ=255)                                                                                                                                      gtgGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTGGCCAACGATCgcgc             >  2:85403/1‑149 (MQ=255)                                                                                                                                      gtgGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTGGCCAACGATCgcgc             >  2:79561/1‑149 (MQ=255)                                                                                                                                          aTTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTGGCCAACGATCGCGCCGGc         <  4:126850/149‑1 (MQ=255)                                                                                                                                                gAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCACCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTGGCCAACGATCGCGCCGGCAAATTg   >  8:174047/1‑149 (MQ=255)                                                                                                                                                 aGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTGGCCAACGATCGCGCCGGCAAATTGc  <  5:125130/149‑1 (MQ=255)                                                                                                                                                  gcgcATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTgg                          <  2:64927/124‑1 (MQ=255)                                                                                                                                                  gcgcATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTgg                          >  1:64927/1‑124 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TGCGAGTGTTCATTCACGACTCCAGGCCAGCACGGTGATGTGGTGGCTTTAGCGTCGGTGAACAGAACGTTGCAGCGTGATTGCTTATTCGGTCAGGTCATGCCGTTTGGTTAATCAGGGGCTGGCGCGGCGTGTGGATTGGCGAGCGCATCCGCGTTAGACAGGCTTCGTACCCGCGCCAACGCTGCGCTACGGATGCTGATCTGTGGGCGTTATTGGGGCCGCGCGCGGAGCGAGGGCGGACTGTGCGCCAGCTCAGGGCAATTTGGCCAACGATCGCGCCGGCAAATTGC  >  NC_002947/3094073‑3094365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.