New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3444544 =	46 (0.720)	3 (0.050)	3/246	NT	5.9%	coding (24/846 nt)	gpU	tail formation protein
	?	NC_002947	3444599 =	52 (0.840)					coding (79/846 nt)	gpU	tail formation protein

CAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCT  >  NC_002947/3444396‑3444682                                                                                                                                                     |                                                                                                                                           cAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAg                                                                                                                                            <  1:53869/149‑1 (MQ=255)  aaaCCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAgt                                                                                                                                           >  7:186501/1‑149 (MQ=255)   aaCCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAgtc                                                                                                                                          <  8:186501/149‑1 (MQ=255)       aaTTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCa                                                                                                                                      >  8:342910/1‑149 (MQ=255)               aaCGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCa                                                                                                                               <  4:339096/148‑1 (MQ=255)               aaCGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAg                                                                                                                              >  5:240616/1‑149 (MQ=255)                        ggttatggTATGTGGGGGCTGTTTGACGGCTGGCAGCGGGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGt                                                                                                                        <  2:337387/140‑1 (MQ=255)                          aaaCGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACt                                                                                                                                    <  8:85547/132‑1 (MQ=255)                          aaaCGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACt                                                                                                                                    >  7:85547/1‑132 (MQ=255)                          aaaCGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAg                                                                                                                   >  8:74681/1‑149 (MQ=255)                                           tGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAgccggccg                                                                                                   >  4:361790/1‑148 (MQ=255)                                           tGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGAGGGGGAAgccggcc                                                                                                    <  3:145694/147‑1 (MQ=255)                                           tGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCAAGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAgccggcc                                                                                                    >  4:145694/1‑147 (MQ=255)                                                        gcccatctcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACg                                                                                     >  6:300887‑M1/94‑149 (MQ=255)                                                           gcgcGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGATGGCa                                                                                  <  6:236782/149‑1 (MQ=255)                                                           gcgcGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCa                                                                                  >  2:104018/1‑149 (MQ=255)                                                               tcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGcc                                                                                         >  3:112737‑M1/87‑138 (MQ=255)                                                               tcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccGTCGTCACATTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGcc                                                                                         <  4:112737‑M1/52‑1 (MQ=255)                                                               gcggTGGCCGCGCGCACGCCCCCGGCGCAGCGGGTCGAGCACCCCCACGTGCACGCAGGGCCTATGGCCTACATGGAACTGCTGGAGGCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCt                                                                              <  8:81355/147‑1 (MQ=255)                                                                 ggTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTgg                                                                            <  3:209296/149‑1 (MQ=255)                                                                  gTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCg                                                                                                                 >  6:410230/1‑111 (MQ=255)                                                                  gTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCg                                                                                                                 <  5:410230/111‑1 (MQ=255)                                                                       tGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGc                                                                      >  1:220128/1‑149 (MQ=255)                                                                        gcgcgcACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGc                                                                      >  4:140449/1‑148 (MQ=255)                                                                            gcACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACg                                                                                     <  8:266714/129‑1 (MQ=255)                                                                            gcACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACg                                                                                     >  7:266714/1‑129 (MQ=255)                                                                            gcACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAAc                                                                 <  1:104018/149‑1 (MQ=255)                                                                                                ttCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTAc                                             <  6:240616/149‑1 (MQ=255)                                                                                                ttCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTAc                                             <  2:220128/149‑1 (MQ=255)                                                                                                   gATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCgg                                          >  4:214299/1‑149 (MQ=255)                                                                                                   gATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCg                                           <  7:74681/148‑1 (MQ=255)                                                                                                    aTCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGt                                         >  7:322476/1‑149 (MQ=255)                                                                                                       aaCCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGtgct                                      >  7:92303/1‑149 (MQ=255)                                                                                                        aCCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGtgctg                                     >  8:258105/1‑149 (MQ=255)                                                                                                           ccACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATc                                                        >  6:401597/1‑127 (MQ=255)                                                                                                           ccACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATc                                                        <  5:401597/127‑1 (MQ=255)                                                                                                           ccACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGt                                  >  4:102529/1‑149 (MQ=255)                                                                                                            cACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCt                                                                     <  5:169594/113‑1 (MQ=255)                                                                                                            cACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCt                                                                     >  6:169594/1‑113 (MQ=255)                                                                                                             aCGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTcc                                >  5:233749/1‑149 (MQ=255)                                                                                                                    aggaggGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTg                          <  3:140449/148‑1 (MQ=255)                                                                                                                              aTGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATccc               >  7:320057/1‑149 (MQ=255)                                                                                                                                 gCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGtt            >  5:134286/1‑149 (MQ=255)                                                                                                                                  ccTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGTGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGttt           <  3:113376/149‑1 (MQ=255)                                                                                                                                  ccTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCTCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGttt           <  7:342910/149‑1 (MQ=255)                                                                                                                                   cTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTc          >  1:258139/1‑149 (MQ=255)                                                                                                                                       aTGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGa                        <  5:305542/131‑1 (MQ=255)                                                                                                                                       aTGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGa                        >  6:305542/1‑131 (MQ=255)                                                                                                                                       aTGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTAcc      >  4:230756/1‑149 (MQ=255)                                                                                                                                         ggAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATc                 <  8:266724/136‑1 (MQ=255)                                                                                                                                         ggAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATc                 >  7:266724/1‑136 (MQ=255)                                                                                                                                              tgctgGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCt  >  5:3401/1‑146 (MQ=255)                                                                                                                                                     |                                                                                                                                           CAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCT  >  NC_002947/3444396‑3444682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.