New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1004713	47 (0.730)	3 (0.050)	3/242	NT	6.1%	coding (738/987 nt)	PP_0866	transmembrane sensor
	?	NC_002947	= 1004745	47 (0.770)					coding (770/987 nt)	PP_0866	transmembrane sensor

AACAGGGGTCGGTGCGGGTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCAACGATACAGACGCTCTGCTGCGG  >  NC_002947/1004598‑1004890                                                                                                                                                    |                                                                                                                                                    aaCAGGGGTCGGTGCGGGTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTg                                                                                                                                                    >  7:364855‑M2/1‑148 (MQ=255)       ggTCGGTGCGGGTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTc                                                                                                                                              <  1:11258/149‑1 (MQ=255)       ggTCGGTGCGGGTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTc                                                                                                                                              <  1:55549/149‑1 (MQ=255)                gggTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTggtgt                                                                                                                                                >  8:346149‑M2/1‑133 (MQ=255)                gggTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTggtgt                                                                                                                                                <  7:346149‑M2/138‑6 (MQ=255)                gggTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGc                                                                                                                                      >  6:286808/1‑148 (MQ=255)                       gggCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCg                                                                                                                              >  4:248393/1‑149 (MQ=255)                        ggCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACg                                                                                                                                       <  3:282766/139‑1 (MQ=255)                        ggCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACg                                                                                                                                       >  4:282766/1‑139 (MQ=255)                             tggCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATACACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAag                                                                                                                        <  6:96258/148‑1 (MQ=255)                                    tCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGc                                                                                                                 >  4:8699/1‑149 (MQ=255)                                       ccGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGa                                                                                                              <  5:286808/149‑1 (MQ=255)                                        cGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGa                                                                                                              >  2:146188/1‑148 (MQ=255)                                              aaCTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTcg                                                                                                       >  7:385001/1‑149 (MQ=255)                                                   aCGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACg                                                                                                                                       <  3:280139/112‑1 (MQ=255)                                                   aCGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACg                                                                                                                                       >  4:280139/1‑112 (MQ=255)                                                    cGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTAc                                                                                                 >  2:405331/1‑149 (MQ=255)                                                     ggCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTAcc                                                                                                <  2:299881/149‑1 (MQ=255)                                                     ggCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTAcc                                                                                                >  4:331849/1‑149 (MQ=255)                                                         gggCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCg                                                                                            >  2:182828/1‑149 (MQ=255)                                                                    gCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTggtgtt                                                                                                                                               <  1:144677‑M2/87‑7 (MQ=255)                                                                    gCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTggtgtt                                                                                                                                               >  2:144677‑M2/1‑81 (MQ=255)                                                                    gCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGc                                                                                 <  3:8699/149‑1 (MQ=255)                                                                             tGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGc‑cc                                                                       <  8:385001/149‑1 (MQ=255)                                                                              gCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGc‑cc‑c                                                                     >  2:64041/1‑149 (MQ=255)                                                                               cacaGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑Ct                                                                    <  3:331849/149‑1 (MQ=255)                                                                                acaGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGACACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTg                                                                   >  3:77280/1‑149 (MQ=255)                                                                                acaGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTc                                                                                             <  6:383299/125‑1 (MQ=255)                                                                                acaGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTc                                                                                             >  5:383299/1‑125 (MQ=255)                                                                                 caGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTgg                                                                  >  7:110357/1‑149 (MQ=255)                                                                                  aGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTgg                                                                  >  3:16820/1‑148 (MQ=255)                                                                                   gggCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGa                                                                <  3:248393/149‑1 (MQ=255)                                                                                      ccTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑Ct                                                                    >  8:262403/1‑142 (MQ=255)                                                                                      ccTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑Ct                                                                    <  7:262403/142‑1 (MQ=255)                                                                                       cTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGt                                                            <  4:16820/149‑1 (MQ=255)                                                                                        tGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTc                                                           <  8:110357/149‑1 (MQ=255)                                                                                             gccgcACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTc                                                                            <  4:120681/129‑1 (MQ=255)                                                                                             gccgcACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTc                                                                            >  3:120681/1‑129 (MQ=255)                                                                                              ccgcACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTcgcgc                                                       <  1:146188/147‑1 (MQ=255)                                                                                                      tATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCt                                             >  3:267040/1‑149 (MQ=255)                                                                                                            gTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTggtgttgaccgcatagggtgcggcgaccaggccctgtgcatctatatgcgacccctgcccggccgtcagttgcgccggcgagt                                                                  >  4:215605‑M2/1‑41 (MQ=255)                                                                                                            gTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTggtgttgaccgcatagggtgcggcgaccaggccctgtgcatctatatgcgacccctgcccggccgtcagttgcgccggcgagt                                                                  <  3:215605‑M2/124‑84 (MQ=255)                                                                                                             tCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCgg                                       >  7:220770/1‑148 (MQ=255)                                                                                                             tCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGc                                      >  4:54800/1‑149 (MQ=255)                                                                                                               aaCACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTggtgttgaccgcatagggtgcggcgaccaggccctgtgcatctatatgcgacccctgcccggccgtcagttgcgccggcgagtcgcccttgccctgcacccgcaccgaccc                                      <  3:89638‑M2/149‑112 (MQ=255)                                                                                                                 cacCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCt                                  >  2:332943/1‑149 (MQ=255)                                                                                                                     ggCGCCATTCCCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAg                              <  4:77280/149‑1 (MQ=255)                                                                                                                        gcCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTAc                           <  1:68082/149‑1 (MQ=255)                                                                                                                           aTTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCaa                        >  3:303648/1‑149 (MQ=255)                                                                                                                            ttACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCAAc                       <  1:182828/149‑1 (MQ=255)                                                                                                                                cGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCATCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCt                                             >  6:311042/1‑123 (MQ=255)                                                                                                                                cGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCATCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCt                                             <  5:311042/123‑1 (MQ=255)                                                                                                                                 gCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTgc                                                 >  3:18244/1‑118 (MQ=255)                                                                                                                                 gCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTgc                                                 <  4:18244/118‑1 (MQ=255)                                                                                                                                      gCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCAACGATACAGACg             <  8:220770/149‑1 (MQ=255)                                                                                                                                               cAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCAACGATACAGACGCTCtgctgc    <  1:64041/149‑1 (MQ=255)                                                                                                                                               cAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCAACGATACAGACGCTCtgctgc    >  4:149637/1‑149 (MQ=255)                                                                                                                                                   cTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGCTCCTCTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCAACGATACAGACGCTCTGCTGCgg  <  1:332943/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AACAGGGGTCGGTGCGGGTGCAGGGCAAGGGCGACTCGCCGGCGCAACTGACGGCCGGGCAGGGGTCGCATATAGATGCACAGGGCCTGGTCGCCGCACCCTATGCGGTCAACACCGGCGCCATTACCGCATGGCGACAGGGCAAGCTGGTGTTCGACAACGCAACCCTCGCCGAAGTAGTGGCCGAAACCTCGCGCTACCGTCGCCAGCCATTGCGGGTCGC‑CC‑CTGGGAAAGTCGCGCGGCTGCGCCTGTCCGGCACCTTCAGTACCAACGATACAGACGCTCTGCTGCGG  >  NC_002947/1004598‑1004890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.