New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2856680 =	51 (0.800)	3 (0.050)	3/238	NT	6.0%	coding (52/165 nt)	PP_2509	hypothetical protein
	?	NC_002947	2856723 =	46 (0.770)					coding (9/165 nt)	PP_2509	hypothetical protein

CTAGGTCGCCTTGGCGGCTCTCCTCACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGATGCGTCATGATAATCACTCGCAATAAATAAAA  >  NC_002947/2856575‑2856868                                                                                                                                                     |                                                                                                                                                  ctAGGTCGCCTTGGCGGCTCTCCTCACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCa                                                                                                                                                   <  5:90471/149‑1 (MQ=255)   gtcgttcgatgcctacgagtcaactgtatgagccgaatctggctttggaataagtagcgcacagccggtagccggttatgagttaccacacaccatggcgcctGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAgg                                                                                                                                                 >  5:76166‑M1/104‑149 (MQ=255)         ccTTGGCGGCTCTCCTCACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTCGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCAt                                                                                                                                           >  4:303849/1‑149 (MQ=255)             ggcggcTCTCCTCACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGgt                                                                                                                                        <  8:297405/148‑1 (MQ=255)              gcggcTCTCCTCACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGgtgt                                                                                                                                      >  7:105008/1‑149 (MQ=255)              gcggcTCTCCTCACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGgtgt                                                                                                                                      <  3:235596/149‑1 (MQ=255)                ggcaatcctcACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGgtgtgt                                                                                                                                    <  1:144632/144‑1 (MQ=255)                     tcctcACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCa                                                                                                                                            >  1:9153/1‑136 (MQ=255)                     tcctcACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCa                                                                                                                                            <  2:9153/136‑1 (MQ=255)                      cctcACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATg                                                                                                                                          <  3:141770/137‑1 (MQ=255)                      cctcACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATg                                                                                                                                          >  4:141770/1‑137 (MQ=255)                        tcACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCAt                                                                                                                                           <  7:223229/134‑1 (MQ=255)                        tcACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGACGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCAt                                                                                                                                           >  8:223229/1‑134 (MQ=255)                        taaCTGATCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCTGCATCCAGCCTTGACGATCTCCTCCTCCCGCTCAGGAGCCATGGTGTGTGGTAACt                                                                                                                             >  4:309248/3‑148 (MQ=255)                                cGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCgg                                                                                                                    >  6:332448/1‑149 (MQ=255)                                 ggTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGc                                                                                                                   <  5:332448/149‑1 (MQ=255)                                     tAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCAGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAAc                                                                                                               >  5:399488/1‑149 (MQ=255)                                       aTCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACgg                                                                                                             >  4:103680/1‑149 (MQ=255)                                       aTCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACgg                                                                                                             <  8:251112/149‑1 (MQ=255)                                        tCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGc                                                                                                            >  6:183032/1‑149 (MQ=255)                                          aGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCtg                                                                                                          >  4:190038/1‑149 (MQ=255)                                                        gTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTc                                                                                            <  5:183032/149‑1 (MQ=255)                                                            cGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCaaa                                                                                        <  4:303398/149‑1 (MQ=255)                                                             gCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAg                                                                                       >  3:404002/1‑149 (MQ=255)                                                               aCGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGc                                                                                      >  6:16702/1‑148 (MQ=255)                                                                          tGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCg                                                                              <  4:127851/145‑1 (MQ=255)                                                                          tGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCg                                                                              >  3:127851/1‑145 (MQ=255)                                                                                 ccTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGt                                                                   <  3:303849/149‑1 (MQ=255)                                                                                    aCGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGc                                                                            >  2:247545/1‑137 (MQ=255)                                                                                    aCGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGc                                                                            <  1:247545/137‑1 (MQ=255)                                                                                          aaCCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCg                                                            >  4:201553/1‑147 (MQ=255)                                                                                           aCCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTa                                                          <  5:16702/148‑1 (MQ=255)                                                                                           aCCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAg                                                         <  4:404002/149‑1 (MQ=255)                                                                                            ccAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTc                                                                                            <  5:422313/113‑1 (MQ=255)                                                                                            ccAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTc                                                                                            >  6:422313/1‑113 (MQ=255)                                                                                             cAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAgg                                                        >  3:357188/1‑148 (MQ=255)                                                                                               gCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCAt                                                     >  7:100838/1‑149 (MQ=255)                                                                                                 gAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATc                                                    >  3:319333/1‑148 (MQ=255)                                                                                                     aCCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAAc                                                >  6:19082/1‑148 (MQ=255)                                                                                                      cccAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGa                                              <  6:399488/149‑1 (MQ=255)                                                                                                       cctgagcgggcggcggagatcgtcaaggctggatgccggcccgctcAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTACCGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGAc                                             >  5:76166‑M2/47‑149 (MQ=255)                                                                                                          gagcgggcggcggagatcgtcaaggctggatgccggcccgctcAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTa                                           >  7:191925‑M2/44‑148 (MQ=255)                                                                                                            gcgggcggcggagatcgtcaaggctggatgccggcccgctcAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTaaa                                         <  6:76166‑M2/107‑1 (MQ=255)                                                                                                              GGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTc                                      >  3:103680‑M1/1‑149 (MQ=255)                                                                                                                 cctgCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGTCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCgg                                   <  3:309248/146‑1 (MQ=255)                                                                                                                         cAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGa                                  >  5:263603/1‑142 (MQ=255)                                                                                                                         cAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGa                                  <  6:263603/142‑1 (MQ=255)                                                                                                                            ccTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTa                                           <  1:145038/130‑1 (MQ=255)                                                                                                                            ccTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTa                                           >  2:145038/1‑130 (MQ=255)                                                                                                                                gACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGATGCGTCAtcaatat                    >  8:387942/1‑143 (MQ=255)                                                                                                                                 aCGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGc                                                       >  4:330116/1‑113 (MQ=255)                                                                                                                                 aCGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGc                                                       <  3:330116/113‑1 (MQ=255)                                                                                                                                         cgccgcCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGATGCGTCATGATAATCACTCGCaa           >  7:223227/1‑149 (MQ=255)                                                                                                                                                  ctcAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGATGCGTCATGATAATCACTCGCAATAAATaaaa  <  8:191925‑M2/146‑1 (MQ=255)                                                                                                                                                  ctcAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGATGCGTCATGATAATCACTCGCAATAAATaaaa  <  3:201553‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CTAGGTCGCCTTGGCGGCTCTCCTCACTGACCGGTTTAATCAGTTCTGGCCCTTGGTTACGCACGTTGCCGACTGCTTTACCTACGGAGAACCAGCGAAAACCCAGAGCGGGCCGGCATCCAGCCTTGACGATCTCCGCCGCCCGCTCAGGCGCCATGGTGTGTGGTAACTCATAACCGGCTAACGGCTGTGCGCTACTTATTCCAAAGCCAGATTCGGCTCATACAGTTGACTCGTAGGCATCGAACGACTAAAGTCCGGATGCGTCATGATAATCACTCGCAATAAATAAAA  >  NC_002947/2856575‑2856868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.