New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4240860	45 (0.700)	3 (0.050)	3/246	NT	6.4%	coding (839/1413 nt)	PP_3718	aminotransferase
	?	NC_002947	= 4240907	44 (0.710)					coding (792/1413 nt)	PP_3718	aminotransferase

AGATGCGCTCGGAAAAAATACACGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGT  >  NC_002947/4240759‑4241052                                                                                                                                                     |                                                                                                                                                  aGATGCGCTCGGAAAAAATACACGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTtcgtcg                                                                                                                                                   >  3:187784/1‑149 (MQ=255)     gcgcTCGGAAAAAATACACGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGgcga                                                                                                                                               <  8:310058‑M2/149‑5 (MQ=255)       gcTCGGAAAAAATACACGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTCACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGcgac                                                                                                                                              >  1:394561/1‑148 (MQ=255)           ggAAAAAATACACGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAAc                                                                                                                                          <  4:73920/148‑1 (MQ=255)             aaaaaaTACACGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAg                                                                                                                                        >  3:278841/1‑148 (MQ=255)                     cacGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTa                                                                                                                               <  4:187784/149‑1 (MQ=255)                              aGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGca                                                                                                                      <  2:372237/149‑1 (MQ=255)                                                   aGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAAc                                                                                                                                          <  6:7080/108‑1 (MQ=255)                                                   aGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAAc                                                                                                                                          >  5:7080/1‑108 (MQ=255)                                                   aGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGaa                                                                                                 >  3:345829/1‑149 (MQ=255)                                                    ggCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAg                                                                                                <  4:403669/149‑1 (MQ=255)                                                       cTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAg                                                                                             >  3:232035/1‑149 (MQ=255)                                                                    gatgatGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCgggg                                                                                >  2:26849/1‑147 (MQ=255)                                                                       gatgTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTgg                                                                                                                        >  8:109404/1‑106 (MQ=255)                                                                        atgTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGAt                                                                            >  2:37486/1‑149 (MQ=255)                                                                          gTCTGGGGTGACGCCAAACAGTTCATCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCa                                                                          >  7:59452/1‑149 (MQ=255)                                                                             tGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCa                                                                          <  6:266944/146‑1 (MQ=255)                                                                             tGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCa                                                                          >  5:266944/1‑146 (MQ=255)                                                                               gggTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTg                                                                                                                         <  2:87116/97‑1 (MQ=255)                                                                               gggTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTg                                                                                                                         >  1:87116/1‑97 (MQ=255)                                                                                ggTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACcccgc                                                                    <  4:232035/149‑1 (MQ=255)                                                                                ggTGACGCCAAACAGTTCCTCGCTGACGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACcccgc                                                                    >  7:4922/1‑149 (MQ=255)                                                                                 gTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACcccgcc                                                                   >  7:29212/1‑149 (MQ=255)                                                                                      gCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGGGTGATCATTCCGCCCGAgg                                                              <  1:26849/149‑2 (MQ=255)                                                                                      gCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGc                                                              <  8:29212/149‑1 (MQ=255)                                                                                      gCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGc                                                              >  4:401103/1‑149 (MQ=255)                                                                                        cAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGaa                                                                                                 <  6:102215/112‑1 (MQ=255)                                                                                        cAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGaa                                                                                                 >  5:102215/1‑112 (MQ=255)                                                                                        cAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGccc                                                            <  4:33104/149‑1 (MQ=255)                                                                                          aaCAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGc                                                                                                               <  4:293741/96‑1 (MQ=255)                                                                                          aaCAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGc                                                                                                               >  3:293741/1‑96 (MQ=255)                                                                                              gTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtc                                                      >  1:377827/1‑149 (MQ=255)                                                                                                 ccTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcgg                                                    <  8:59452/148‑1 (MQ=255)                                                                                                  cTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGgcgaggaactgtttggcgtcaccccagacatcatcaccaccgccaaaggcctgacctcggcgtacctgccgctgggcgcgtgtattttttccgagcg                                                  <  5:211418‑M2/149‑98 (MQ=255)                                                                                                   tCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGgcgaggaactgtttggcgtcaccccagacatcatcaccaccgccaaaggcctgacctcggcgtacctgccgctgggcgcgtgtattttttccgagcg                                                  <  4:268523‑M2/148‑98 (MQ=255)                                                                                                     gCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGgcgaggaactgttcggcgtcaccccagacatcatcaccaccgccaaaggcctgacctcggcgtacctgccgctgggcgcgtgtattttttccgagcgcat                                               <  4:375858‑M2/149‑101 (MQ=255)                                                                                                     gCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTgg                                                                                                   <  2:47302/97‑1 (MQ=255)                                                                                                     gCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTgg                                                                                                   >  1:47302/1‑97 (MQ=255)                                                                                                      cTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcggctcggc                                              <  7:310058/149‑1 (MQ=255)                                                                                                       tGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCAt                                                          <  3:7370/136‑1 (MQ=255)                                                                                                       tGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCAt                                                          >  4:7370/1‑136 (MQ=255)                                                                                                       tGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcggctcggc                                              >  4:160226/1‑148 (MQ=255)                                                                                                           gatgaagGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATgc                                                                                                        >  8:281783/4‑86 (MQ=255)                                                                                                           gatgaagGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATgc                                                                                                        <  7:281783/83‑1 (MQ=255)                                                                                                           gaagaaGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCG‑CCGAGCCGATCAtgggctcgggcggggt                                        >  3:170452/1‑142 (MQ=255)                                                                                                           gaagaaGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCG‑CCGAGCCGATCAtgggctcgggcggggt                                        <  4:170452/149‑8 (MQ=255)                                                                                                            aagaagGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCgaagaa                                        >  7:305797/1‑149 (MQ=255)                                                                                                               aagGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgc                                     <  6:154364/149‑1 (MQ=255)                                                                                                                  gTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgccgc                                  >  5:239782/1‑149 (MQ=255)                                                                                                                         ggCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTg                           <  6:239782/149‑1 (MQ=255)                                                                                                                                     aGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGc               <  1:37486/149‑1 (MQ=255)                                                                                                                                       gTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGc               >  8:80396/1‑147 (MQ=255)                                                                                                                                              cTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATc      >  5:219056/1‑149 (MQ=255)                                                                                                                                                  gtcgGTGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGt  >  3:122583/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AGATGCGCTCGGAAAAAATACACGCGCCCAGCGGCAGGTACGCCGAGGTCAGGCCTTTGGCGGTGGTGATGATGTCTGGGGTGACGCCAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGT  >  NC_002947/4240759‑4241052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.