New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4822756 | 56 (0.880) | 4 (0.070) | 4/242 | NT | 6.8% | coding (8434/12954 nt) | pvdL | non‑ribosomal peptide synthetase |
? | NC_002947 | = 4822837 | 56 (0.920) | coding (8353/12954 nt) | pvdL | non‑ribosomal peptide synthetase |
CGCAGGCTGTCATGGTGCTGCACCAGCGCAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGCCGGCCTGGCGGGCGCGGCTGA > NC_002947/4822689‑4822983 | cgcaggcTGTCATGGTGCTGCACCAGCGCAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGt < 8:298103/149‑1 (MQ=255) gTGCTGCACCAGCGCAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctgg < 3:90344/148‑1 (MQ=255) cACCAGCGCAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctggccctggc > 8:337207/1‑149 (MQ=255) cACCAGCGCAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctggccctggc < 7:337207/149‑1 (MQ=255) aCCAGCGCAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGgcg > 1:178827/1‑149 (MQ=255) gcgcAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctg > 5:203961/1‑136 (MQ=255) gcgcAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctg < 6:203961/136‑1 (MQ=255) gcgcAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGa < 6:329843/149‑1 (MQ=255) gCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTTGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTg < 1:331359/149‑1 (MQ=255) cTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCg > 4:340247/1‑149 (MQ=255) cTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCg < 6:139529/149‑1 (MQ=255) gTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGc > 1:48783/1‑149 (MQ=255) ccTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGACGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCg < 1:128239/149‑1 (MQ=255) cTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCgc > 3:369949/1‑149 (MQ=255) cTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCgc > 3:111763/1‑149 (MQ=255) cTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCgc > 5:42691/1‑149 (MQ=255) aaCCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctggccctgg > 3:230207/1‑112 (MQ=255) aaCCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctggccctgg < 4:230207/112‑1 (MQ=255) ccAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCgctgagc > 6:21083/1‑149 (MQ=255) cAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTcaacccttggttgaggccacccttgaacaggcattggctgcgctggtgcagcaccatga < 7:216747‑M2/149‑60 (MQ=255) aGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTcaacccttggttgaggccacccttgaacaggcattggctgcgctggtgcagcaccatgaca > 6:288661‑M2/1‑88 (MQ=255) aGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTcaacccttggttgaggccacccttgaacaggcattggctgcgctggtgcagcaccatga < 5:288661‑M2/147‑60 (MQ=255) ggTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTTCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAAc < 6:249752/149‑1 (MQ=255) ggTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGGGCTGAAc < 2:178827/149‑1 (MQ=255) ttGGCGCACCTCCAGCATCACGGTCTTGTTCCAGTGTTGCGGCTGTTGCACGTCACTGTCGAAGAACCAGTGCGGGATCTGCGTCACCCCGGACTGGCCATGGCGAAGACCCATCTCCACAGTGAGAGAGGCTTCGCTGAGATGAAcc > 8:355633/1‑148 (MQ=255) gcgcACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctggccctg > 7:73260/1‑99 (MQ=255) gcgcACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGcctggccctg < 8:73260/99‑1 (MQ=255) gcACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTcg > 4:229140/1‑123 (MQ=255) gcACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTcg < 3:229140/123‑1 (MQ=255) cACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTg > 8:118303/1‑149 (MQ=255) ccTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCgc < 6:289277/129‑1 (MQ=255) ccTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCgc > 5:289277/1‑129 (MQ=255) cTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGc > 5:151383/1‑147 (MQ=255) cccgcagccCGGGCTGGGGCAAGTGGTGCGGCGGTGGCACGGCACGGTCGAAGCACCAGTGCTGGATCGGCGGCAACCCGGCCTGGCCCGGGCGCAGACCCTGCGCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAgg < 4:249432/146‑1 (MQ=255) ccAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGACCCCCAGTTGCGAgg > 8:380901/1‑149 (MQ=255) cagcagCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAggg < 2:48783/149‑1 (MQ=255) cagcaCGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCt > 4:401810/1‑149 (MQ=255) gcaCGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTgg < 5:21083/149‑1 (MQ=255) tCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCGGGGTCTGGAGGGTc < 6:84159/149‑1 (MQ=255) tCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTc < 4:111763/149‑1 (MQ=255) gTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGAt > 3:39405/1‑149 (MQ=255) cAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTg < 6:151383/149‑1 (MQ=255) aGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTgg < 6:42691/149‑1 (MQ=255) gtTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTcaacccttggttgaggccacccttgaacaggcattggctgcgctggtgcagcaccatgacagcctgcgcctgcgcttcagcgacgcccagggccgctggc > 8:216747‑M2/1‑49 (MQ=255) ggCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTc > 3:207555/1‑149 (MQ=255) gtgGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTcgcgc > 3:154677/1‑149 (MQ=255) ggCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCgg > 3:68631/1‑149 (MQ=255) gCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAg < 8:140284/105‑1 (MQ=255) gCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAg > 7:140284/1‑105 (MQ=255) tCGAAGAACCAGTGCTGGATCGGCGGCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGc < 2:316615/147‑1 (MQ=255) gaagaaCCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGc > 3:62673/1‑149 (MQ=255) aagaaCCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGgcg < 3:317147/44‑1 (MQ=255) aagaaCCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGgcg > 4:317147/1‑44 (MQ=255) aagaaCCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGaa > 6:118576/1‑122 (MQ=255) aagaaCCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGaa < 5:118576/122‑1 (MQ=255) gaaCCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGCCgg < 4:39405/149‑1 (MQ=255) ccAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCgg > 6:255375/1‑129 (MQ=255) ccAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCgg < 5:255375/129‑1 (MQ=255) cAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGCCGGCCTg > 2:198331/1‑149 (MQ=255) gCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGCCGGCCTggcgg > 2:274010/1‑149 (MQ=255) tCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGCCGGCCTGGCGGGCGCgg < 3:401810/149‑1 (MQ=255) cGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGCCGGCCTGGCGGGCGCGGCTGa > 6:592/1‑149 (MQ=255) | CGCAGGCTGTCATGGTGCTGCACCAGCGCAGCCAATGCCTGTTCAAGGGTGGCCTCAACCAAGGGTTGGCGCACCTCCAGCAGCACGGTCTGGTTCCAGTGTTGCGGCTGTGGCACGTCACTGTCGAAGAACCAGTGCTGGATCGGCGTCAACCCGGCCTGGCCCTGGCGCAGACCCTGCTCCACCGTGCTCGCGGCTTCGCTGAGCTGAACCACAGTTGCCAGGGTCTGGATGGTCTGATGCTGGAACAGGTCGCGCGGGGTGAATTGCAAGCCGGCCTGGCGGGCGCGGCTGA > NC_002947/4822689‑4822983 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |