New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5211690 | 44 (0.690) | 3 (0.050) | 3/238 | NT | 6.2% | coding (260/1638 nt) | PP_4592 | metal dependent hydrolase |
? | NC_002947 | = 5211711 | 49 (0.820) | coding (239/1638 nt) | PP_4592 | metal dependent hydrolase |
CAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCA > NC_002947/5211563‑5211855 | cagcaCACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACAACAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCAc > 1:290445/1‑149 (MQ=255) aGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCGTGAAGTAAGCCACGCCCGCGCCACt < 6:321980‑M2/149‑2 (MQ=255) aGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACt < 8:130905‑M2/149‑2 (MQ=255) gCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtc > 2:96843‑M2/1‑147 (MQ=255) acacCCAGCAGCCGGATATACGCGGCAAACTTGATCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcat > 7:356117‑M2/1‑145 (MQ=255) cacCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAACGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcat > 1:90501‑M2/1‑145 (MQ=255) cccAGCAGCAGGATATACGCGGCAAACTTGAAGGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa > 5:327008‑M2/1‑142 (MQ=255) ccAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa < 7:346123‑M2/148‑8 (MQ=255) agcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCGTGAAGTAAGCCACGCCCGCGCCACTCATGAACAacac < 5:321980/149‑1 (MQ=255) cagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGa < 7:130905/149‑1 (MQ=255) agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt < 6:284978/149‑1 (MQ=255) agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt < 2:290445/149‑1 (MQ=255) gCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCtt > 8:286401/1‑149 (MQ=255) gCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCtt < 8:107429/149‑1 (MQ=255) cTTTAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTa < 7:211620/149‑1 (MQ=255) aaCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACAt < 7:286401/148‑1 (MQ=255) aCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATAc > 3:179952/1‑149 (MQ=255) aCATCAAGTCGCGCACCTCCGCAATATTCGTCACGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGCTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCTCTACATACCg > 4:136237/1‑148 (MQ=255) aTCAAGTCGCGCACCTCCTCAATATTGCTCTCGGCCATATTACGGAACATGCCGTCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGaa < 4:227363/149‑1 (MQ=255) aaGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAgg > 8:16344/1‑148 (MQ=255) aaGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGc < 5:175271/149‑1 (MQ=255) cgagcACCTCAGCAATATTGTTCTCGGCCATATTACGGAACATGCCGGCTTCAATAA‑GTACTCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAAt < 6:414501/145‑1 (MQ=255) ttGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGAtt < 8:346123/149‑1 (MQ=255) ggCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAAcgcg > 8:109731/1‑148 (MQ=255) ggCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGa < 5:43230/149‑1 (MQ=255) gCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc > 5:56569/1‑135 (MQ=255) gCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc < 6:56569/135‑1 (MQ=255) gCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGaa < 7:16344/149‑1 (MQ=255) ccATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc < 5:197083/134‑1 (MQ=255) ccATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc > 6:197083/1‑134 (MQ=255) cATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAAtt < 1:356483/121‑1 (MQ=255) cATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAAtt > 2:356483/1‑121 (MQ=255) atTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCa > 7:99330/1‑149 (MQ=255) aTGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCCCGCATGACCACCACGATAAATAACGGCTTCTCTACAGACCGGTAGGCCAGGAACGTGAGGATCAGATGGAACGCGAAGAGCCTcagcctagc > 8:356400/1‑144 (MQ=255) aTGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcacag > 1:236810/1‑148 (MQ=255) aTGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAAAAAGATAATTACCGGCTGCACTACATACGGGAAGGCAATTAAAGTGTGGATCAGATGGCCGGAGAAGAGCTTctgaacag > 8:361872/1‑148 (MQ=255) aaTAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGAc > 2:26763/1‑149 (MQ=255) a‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCa < 8:99330/148‑1 (MQ=255) gTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGa < 6:412449/107‑1 (MQ=255) gTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGa > 5:412449/1‑107 (MQ=255) gCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCcac > 3:166245/1‑148 (MQ=255) gTACTGGTTCATGAAGTAAGCCACGCCCGAGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCTGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAAcc < 8:343490/149‑1 (MQ=255) tGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgctgct < 1:353435‑M2/149‑119 (MQ=255) tGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCg > 5:13403/1‑148 (MQ=255) gTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGaaa < 1:26763/149‑1 (MQ=255) ttCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCCGCCACAACCCCGAAAg > 6:277761/1‑149 (MQ=255) cATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGc > 6:184665/1‑149 (MQ=255) cATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGc > 4:166218/1‑149 (MQ=255) aTGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttc < 1:108177‑M2/117‑93 (MQ=255) aTGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttc > 2:108177‑M2/1‑25 (MQ=255) tGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCg > 1:353428/1‑149 (MQ=255) aGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCa < 5:184665/149‑1 (MQ=255) gTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAg < 2:353428/149‑1 (MQ=255) tAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcacagc < 5:28093/110‑1 (MQ=255) tAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcacagc > 6:28093/1‑110 (MQ=255) ccACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAg > 3:286520/1‑73 (MQ=255) ccACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAg < 4:286520/73‑1 (MQ=255) cACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCACCCACAACCCCGAAAGCCCGGCAGGAacca > 7:58042/1‑149 (MQ=255) aCGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAaccac > 2:186745/1‑149 (MQ=255) cccGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGc < 4:179952/149‑1 (MQ=255) ccGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCt > 7:273911/1‑149 (MQ=255) gcCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgctgctgggtgtgctgccatcggtgctgctgt > 2:353435‑M2/1‑5 (MQ=255) gcCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCa < 8:273911/149‑1 (MQ=255) | CAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAA‑GTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCA > NC_002947/5211563‑5211855 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |