New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 521169044 (0.690)3 (0.050) 3/238 NT 6.2% coding (260/1638 nt) PP_4592 metal dependent hydrolase
?NC_002947 = 5211711 49 (0.820)coding (239/1638 nt) PP_4592 metal dependent hydrolase

CAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCA  >  NC_002947/5211563‑5211855
                                                                                                                                                     |                                                                                                                                                
cagcaCACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACAACAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCAc                                                                                                                                                  >  1:290445/1‑149 (MQ=255)
 aGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCGTGAAGTAAGCCACGCCCGCGCCACt                                                                                                                                                 <  6:321980‑M2/149‑2 (MQ=255)
 aGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACt                                                                                                                                                 <  8:130905‑M2/149‑2 (MQ=255)
  gCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtc                                                                                                                                                >  2:96843‑M2/1‑147 (MQ=255)
    acacCCAGCAGCCGGATATACGCGGCAAACTTGATCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcat                                                                                                                                              >  7:356117‑M2/1‑145 (MQ=255)
     cacCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAACGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcat                                                                                                                                              >  1:90501‑M2/1‑145 (MQ=255)
       cccAGCAGCAGGATATACGCGGCAAACTTGAAGGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                                           >  5:327008‑M2/1‑142 (MQ=255)
        ccAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                                           <  7:346123‑M2/148‑8 (MQ=255)
             agcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCGTGAAGTAAGCCACGCCCGCGCCACTCATGAACAacac                                                                                                                                     <  5:321980/149‑1 (MQ=255)
               cagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGa                                                                                                                                   <  7:130905/149‑1 (MQ=255)
                agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                                                                                                                  <  6:284978/149‑1 (MQ=255)
                agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGAt                                                                                                                                  <  2:290445/149‑1 (MQ=255)
                            gCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCtt                                                                                                                      >  8:286401/1‑149 (MQ=255)
                            gCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCtt                                                                                                                      <  8:107429/149‑1 (MQ=255)
                                 cTTTAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTa                                                                                                                 <  7:211620/149‑1 (MQ=255)
                                     aaCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACAt                                                                                                              <  7:286401/148‑1 (MQ=255)
                                      aCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATAc                                                                                                            >  3:179952/1‑149 (MQ=255)
                                         aCATCAAGTCGCGCACCTCCGCAATATTCGTCACGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGCTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCTCTACATACCg                                                                                                          >  4:136237/1‑148 (MQ=255)
                                           aTCAAGTCGCGCACCTCCTCAATATTGCTCTCGGCCATATTACGGAACATGCCGTCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGaa                                                                                                       <  4:227363/149‑1 (MQ=255)
                                              aaGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAgg                                                                                                     >  8:16344/1‑148 (MQ=255)
                                              aaGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGc                                                                                                    <  5:175271/149‑1 (MQ=255)
                                                  cgagcACCTCAGCAATATTGTTCTCGGCCATATTACGGAACATGCCGGCTTCAATAAGTACTCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAAt                                                                                                 <  6:414501/145‑1 (MQ=255)
                                                                   ttGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGAtt                                                                               <  8:346123/149‑1 (MQ=255)
                                                                           ggCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAAcgcg                                                                        >  8:109731/1‑148 (MQ=255)
                                                                           ggCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGa                                                                       <  5:43230/149‑1 (MQ=255)
                                                                            gCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc                                                                                    >  5:56569/1‑135 (MQ=255)
                                                                            gCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc                                                                                    <  6:56569/135‑1 (MQ=255)
                                                                            gCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGaa                                                                      <  7:16344/149‑1 (MQ=255)
                                                                             ccATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc                                                                                    <  5:197083/134‑1 (MQ=255)
                                                                             ccATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATc                                                                                    >  6:197083/1‑134 (MQ=255)
                                                                              cATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAAtt                                                                                                <  1:356483/121‑1 (MQ=255)
                                                                              cATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAAtt                                                                                                >  2:356483/1‑121 (MQ=255)
                                                                                 atTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCa                                                                 >  7:99330/1‑149 (MQ=255)
                                                                                           aTGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCCCGCATGACCACCACGATAAATAACGGCTTCTCTACAGACCGGTAGGCCAGGAACGTGAGGATCAGATGGAACGCGAAGAGCCTcagcctagc                                                       >  8:356400/1‑144 (MQ=255)
                                                                                           aTGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcacag                                                        >  1:236810/1‑148 (MQ=255)
                                                                                           aTGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAAAAAGATAATTACCGGCTGCACTACATACGGGAAGGCAATTAAAGTGTGGATCAGATGGCCGGAGAAGAGCTTctgaacag                                                        >  8:361872/1‑148 (MQ=255)
                                                                                                      aaTAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGAc                                            >  2:26763/1‑149 (MQ=255)
                                                                                                          aGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCa                                         <  8:99330/148‑1 (MQ=255)
                                                                                                            gTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGa                                                                                 <  6:412449/107‑1 (MQ=255)
                                                                                                            gTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGa                                                                                 >  5:412449/1‑107 (MQ=255)
                                                                                                                gCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCcac                                    >  3:166245/1‑148 (MQ=255)
                                                                                                                   gTACTGGTTCATGAAGTAAGCCACGCCCGAGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCTGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAAcc                                <  8:343490/149‑1 (MQ=255)
                                                                                                                       tGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgctgct                            <  1:353435‑M2/149‑119 (MQ=255)
                                                                                                                       tGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCg                             >  5:13403/1‑148 (MQ=255)
                                                                                                                         gTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGaaa                          <  1:26763/149‑1 (MQ=255)
                                                                                                                          ttCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCCGCCACAACCCCGAAAg                         >  6:277761/1‑149 (MQ=255)
                                                                                                                            cATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGc                       >  6:184665/1‑149 (MQ=255)
                                                                                                                            cATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGc                       >  4:166218/1‑149 (MQ=255)
                                                                                                                             aTGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttc                                                      <  1:108177‑M2/117‑93 (MQ=255)
                                                                                                                             aTGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttc                                                      >  2:108177‑M2/1‑25 (MQ=255)
                                                                                                                              tGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCg                     >  1:353428/1‑149 (MQ=255)
                                                                                                                                 aGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCa                  <  5:184665/149‑1 (MQ=255)
                                                                                                                                  gTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAg                 <  2:353428/149‑1 (MQ=255)
                                                                                                                                   tAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcacagc                                                       <  5:28093/110‑1 (MQ=255)
                                                                                                                                   tAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcacagc                                                       >  6:28093/1‑110 (MQ=255)
                                                                                                                                       ccACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAg                                                                                        >  3:286520/1‑73 (MQ=255)
                                                                                                                                       ccACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAg                                                                                        <  4:286520/73‑1 (MQ=255)
                                                                                                                                        cACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCACCCACAACCCCGAAAGCCCGGCAGGAacca           >  7:58042/1‑149 (MQ=255)
                                                                                                                                         aCGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAaccac          >  2:186745/1‑149 (MQ=255)
                                                                                                                                            cccGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGc       <  4:179952/149‑1 (MQ=255)
                                                                                                                                             ccGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCt      >  7:273911/1‑149 (MQ=255)
                                                                                                                                                 gcCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgctgctgggtgtgctgccatcggtgctgctgt  >  2:353435‑M2/1‑5 (MQ=255)
                                                                                                                                                 gcCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCa  <  8:273911/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                
CAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCCGGCAGGAACCACCGCTTGCA  >  NC_002947/5211563‑5211855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.