New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5513267	44 (0.690)	4 (0.080)	4/202	NT	9.6%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513323	40 (0.790)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

TGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCT  >  NC_002947/5513179‑5513466                                                                                                                                                  |                                                                                                                                                tGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttac                                                                                                                                             >  3:192241‑M2/1‑145 (MQ=255)        agATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaa                                                                                                                                      >  4:349363‑M2/1‑138 (MQ=255)          aTGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtta                                                                                                                                              >  1:185317‑M2/1‑136 (MQ=255)          aTGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtta                                                                                                                                              <  2:185317‑M2/139‑4 (MQ=255)                   tggtCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcac                                                                                                                           <  4:277703‑M2/149‑23 (MQ=255)                     gtCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccaagcgc                                                                                                                          <  4:158538‑M2/148‑24 (MQ=255)                        gAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGGCGTAGGAGCGGGTttacccgcgaagaggccggcacaggc                                                                                                                       >  8:130894‑M2/1‑122 (MQ=255)                              tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgc                                                                                                                                         >  1:161456‑M2/1‑116 (MQ=255)                              tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCAt                                                                                                                >  6:424360/1‑149 (MQ=255)                                tCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCACATAGCGGGTAAACCCCGTGCTAAAGTGGGGGTTAATCCAATGGGG‑GGGTACCGGGGGAGGAGCCGGTTTTACCCCGAATAGGCCGGCACCGGCACAGccaac                                                                                                              >  2:211022/1‑145 (MQ=255)                                    ggCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTGCTACAGTGGGCG‑TAATGCCATGGGGCGGTTACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCttt                                                                                                          >  8:295064/1‑149 (MQ=255)                                      ccGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCa                                                                                                        <  6:214346/149‑1 (MQ=255)                                              cGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAActct                                                                                                <  5:207724/149‑1 (MQ=255)                                                gATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTca                                                                                              <  5:424360/149‑1 (MQ=255)                                                gATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑GAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTca                                                                                              >  2:62123/1‑149 (MQ=255)                                                   ttGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCCTGGGGCGGGTGCCGTCGTAGGAGCGGGTTTACCCGCGGAGCGGCCGGCACAGGGAGAGCATGCCTTTCAGGGACTGTCACAt                                                                                           >  1:52503/1‑149 (MQ=37)                                                     gAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccg                                                                                                                               <  2:351034‑M2/111‑19 (MQ=255)                                                     gAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccg                                                                                                                               >  1:351034‑M2/1‑93 (MQ=255)                                                       aTTTTTGCGGCGTGTGCCGGCCTCTTCGCGGTTAACCCCTTTCGTAGCGTGGGGG‑AAATGCAATGGGGGGGTTCCCGTCTTAGGCGGGGTTTAACCCGCTATGTGGCGGGAAAAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTc                                                                                       <  1:62123/149‑1 (MQ=255)                                                              gcgcCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGGGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCg                                                                                <  5:357424/149‑1 (MQ=255)                                                                     tgCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACAccc                                                                          <  1:211022/148‑1 (MQ=255)                                                                     tgCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCt                                                                         <  2:76211/149‑1 (MQ=255)                                                                       ccGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGc                                                                       >  3:59391/1‑149 (MQ=255)                                                                         ggCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGAG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCAc                                                                     >  5:96895/1‑149 (MQ=255)                                                                            ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAg                                                                  >  3:50058/1‑149 (MQ=255)                                                                                   cgGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacac                                                                                  >  7:366389‑M2/1‑63 (MQ=255)                                                                                   cgGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacac                                                                                  <  8:366389‑M2/126‑64 (MQ=255)                                                                                    gggTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcgg                                                          >  8:200343/1‑149 (MQ=255)                                                                                         aCCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCa                                                     <  2:52503/149‑1 (MQ=255)                                                                                          ccccGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgc                                                             >  4:130538‑M2/1‑56 (MQ=255)                                                                                          ccccGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgc                                                             <  3:130538‑M2/140‑85 (MQ=255)                                                                                          ccccGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAg                                                    >  4:77808/1‑149 (MQ=255)                                                                                           cccGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGc                                                   >  6:38611/1‑149 (MQ=255)                                                                                           cccGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGc                                                   >  4:15294/1‑149 (MQ=255)                                                                                                 ccTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATc                                             >  2:218848/1‑149 (MQ=255)                                                                                                   tACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAg                                                                  <  2:74078/126‑1 (MQ=255)                                                                                                   tACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAg                                                                  >  1:74078/1‑126 (MQ=255)                                                                                                        tGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTc                                                                                                         <  3:52933/82‑1 (MQ=255)                                                                                                        tGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTc                                                                                                         >  4:52933/1‑82 (MQ=255)                                                                                                          ggCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGc                                    >  3:360600/1‑149 (MQ=255)                                                                                                          ggCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGc                                    >  3:354628/1‑149 (MQ=255)                                                                                                                aaTGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTc                                                                                       >  2:30913/1‑93 (MQ=255)                                                                                                                aaTGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTc                                                                                       <  1:30913/93‑1 (MQ=255)                                                                                                                 aTGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTcc                              <  7:200343/149‑1 (MQ=255)                                                                                                                 aTGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTc                               <  4:50058/148‑1 (MQ=255)                                                                                                                           gCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCa                    <  5:241099/149‑1 (MQ=255)                                                                                                                             ggTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGcc                     >  8:67595/1‑146 (MQ=255)                                                                                                                                tCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGcc                     >  1:164852/1‑143 (MQ=255)                                                                                                                                 cccGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAAGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGcc                     >  3:35573/1‑142 (MQ=255)                                                                                                                                      cgtAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGaa         <  4:59391/149‑1 (MQ=255)                                                                                                                                       gtAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGaa         <  1:218848/148‑1 (MQ=255)                                                                                                                                           gAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAc    <  6:96895/149‑1 (MQ=255)                                                                                                                                           gAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAc    <  7:67595/149‑1 (MQ=255)                                                                                                                                            aGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAcc   >  6:111648/1‑149 (MQ=255)                                                                                                                                             gCGGGTTTACACGCGAAGAGGCCGGCACAGGCACAGAATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACACTGCACCACTACTACGGCGGCAGCCACATCCTGCGCGGCCTTTACTACGAAGCCAAGATCTGCGAAGTGAcct  >  6:71455/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                TGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCG‑TAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCT  >  NC_002947/5513179‑5513466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.