| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,424,884 | T→C | 5.0% | H20R (CAT→CGT) | PP_5647 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,424,884 | 0 | T | C | 5.0% | 233.1 / 2.5 | 79 | H20R (CAT→CGT) | PP_5647 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (40/35); new base C (2/2); total (42/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.77e-01 | |||||||||||
TTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGAAAATGATC > NC_002947/4424738‑4425030 | tttCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGtgatga > 8:266598/1‑149 (MQ=255)tttCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGtgatga > 8:138225/1‑149 (MQ=255) ggTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGt < 7:215537/148‑1 (MQ=255) cTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCATCACGACGaaatccttg < 3:127868/149‑8 (MQ=255) gTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTGCTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTgg > 1:323092/1‑149 (MQ=255) gTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGt > 2:215749/1‑149 (MQ=255) tAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTc > 2:94042/1‑149 (MQ=255) ccTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGcc > 4:160312/1‑149 (MQ=255) ctACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGAc > 8:97819/1‑120 (MQ=255) ctACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGAc < 7:97819/120‑1 (MQ=255) aCAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTc > 3:392250/1‑147 (MQ=255) aCAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGACTGTACGCGAAAGACGGGTATGCACGTCTATACTACTGCCTTCCTCAAGGATTTCGTCGTGATGACGAAGGAGAAGCGATGGGTCTGCCCAGGTcc > 5:181538/1‑148 (MQ=255) cAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTc > 5:254881/1‑146 (MQ=255) ttCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAAt < 1:94042/149‑1 (MQ=255) tCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTc < 3:61290/149‑1 (MQ=255) ccccGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTcg > 4:197759/1‑149 (MQ=255) cccGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTcgc > 7:360890/1‑149 (MQ=255) gCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTcgccgc < 4:392250/149‑1 (MQ=255) ttGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGa < 7:138225/147‑1 (MQ=255) gTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCa < 1:215749/149‑1 (MQ=255) gTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCa < 1:58656/149‑1 (MQ=255) tACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCa > 5:165073/1‑148 (MQ=255) cacCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCatat < 7:266598/149‑1 (MQ=255) acCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAgg < 7:235581/118‑1 (MQ=255) acCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAgg > 8:235581/1‑118 (MQ=255) acCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAg < 3:24884/117‑1 (MQ=255) acCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAg > 4:24884/1‑117 (MQ=255) acCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACAtctc < 2:325192/144‑1 (MQ=255) acCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACAtctc > 1:325192/1‑144 (MQ=255) acCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCatat > 7:91660/1‑148 (MQ=255) cccGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGATGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCaa > 5:152830/1‑149 (MQ=255) ccGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCaa > 3:329737/1‑148 (MQ=255) tGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGCCATCTCATATCAATctcc > 3:113124/1‑149 (MQ=255) aaGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATctcct < 3:160312/148‑1 (MQ=255) cTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTcttact > 3:393393/1‑149 (MQ=255) t‑‑ttCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATcc > 3:270179/1‑149 (MQ=255) gCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAg < 8:91660/148‑1 (MQ=255) gCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAg < 4:270179/148‑1 (MQ=255) ccTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAg > 1:6104/1‑147 (MQ=255) cTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAg < 6:165073/149‑1 (MQ=255) cTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAg > 5:178872/1‑149 (MQ=255) tCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGa < 7:289978/110‑1 (MQ=255) tCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGa > 8:289978/1‑110 (MQ=255) cgcgAAAGACGGGTTTGCACTTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATTAAGAAGGTGAAGCTCTGGGTCTGCACATGTCCAGAATTTTTCTCCTCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGtcgc < 6:181538/148‑1 (MQ=255) cgcgAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGcgcg > 4:392211/1‑149 (MQ=255) cgcgAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGcgcg < 4:329737/149‑1 (MQ=255) cgAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGt < 6:178872/149‑1 (MQ=255) aaGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTaaa < 2:323092/149‑1 (MQ=255) aaGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTaaa < 3:197759/149‑1 (MQ=255) aCGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAg < 7:241590/57‑1 (MQ=255) aCGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAg > 8:241590/1‑57 (MQ=255) gggTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCACAGTAGGCGCGGTAAagagag > 8:110809/1‑149 (MQ=255) ggTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAgg < 1:342793/149‑1 (MQ=255) tttGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGATGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGga < 6:152830/149‑1 (MQ=255) aCGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGgatagat > 1:216737/1‑149 (MQ=255) aCGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGgatagat < 3:392211/149‑1 (MQ=255) aCGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGgataga > 6:270149/1‑148 (MQ=255) aCGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGgataga > 7:311941/1‑148 (MQ=255) gTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGatat > 7:135429/1‑149 (MQ=255) aTACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCAt < 4:248339/149‑1 (MQ=255) tCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATctcctc > 4:218416/1‑100 (MQ=255) tCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATctcctc < 3:218416/100‑1 (MQ=255) tCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCg > 5:381354/1‑149 (MQ=255) cGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGGCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTaaa < 5:82974/149‑1 (MQ=255) gTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCTCTTAAAt < 5:270149/149‑1 (MQ=255) tCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAagagag < 7:361536/120‑1 (MQ=255) tCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAagagag > 8:361536/1‑120 (MQ=255) tCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGa > 5:257460/1‑149 (MQ=255) aaGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATc > 7:183106/1‑96 (MQ=255) aaGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATc < 8:183106/96‑1 (MQ=255) aaGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTaaa > 5:323862/1‑142 (MQ=255) aaGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTaaa < 6:323862/142‑1 (MQ=255) aaGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGAcc > 2:107026/1‑149 (MQ=255) aaGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGAcc > 5:186363/1‑149 (MQ=255) gATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGt < 2:6104/149‑1 (MQ=255) accttCGTCATCACGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTctta < 4:334261/84‑1 (MQ=255) accttCGTCATCACGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTctta > 3:334261/4‑87 (MQ=255) ccttCGTCATCACGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTg > 3:376498/3‑149 (MQ=255) aTTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTg < 6:254881/149‑1 (MQ=255) cgtcgtGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGaa > 5:243821/1‑148 (MQ=255) gtcgtGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGaaaa > 3:326193/1‑149 (MQ=255) tgatgaCGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCg > 2:264577/1‑123 (MQ=255) tgatgaCGAAGGTGAAGAGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCg < 1:264577/123‑1 (MQ=255) atgaCGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGAAAATg < 6:409558/145‑1 (MQ=255) atgaCGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGAAAATg > 5:409558/1‑145 (MQ=255) atgaCGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGAAAATGATc < 8:135429/148‑1 (MQ=255) atgaCGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGAAAATGATc < 8:360890/148‑1 (MQ=255) atgaCGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGAAAATGATc < 4:113124/148‑1 (MQ=255) | TTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGT‑‑TTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGCGCTGGGTCTGCCCAGGTCCAGAATTTTTCGCCGCGACATCTCATATCAATCTCCTCTTACTTATCCCAGTAGGCGCGGTAAAGAGAGGGATAGATATCCATTTCGCTTAAATGCGACCGGTGGAAAATGATC > NC_002947/4424738‑4425030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |