Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 445,115 G→A 12.4% intergenic (+88/‑200) PP_0367 → / → PP_0368 hypothetical protein/acyl‑CoA dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947445,1150GA12.4% 124.7 / 7.8 49intergenic (+88/‑200)PP_0367/PP_0368hypothetical protein/acyl‑CoA dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (25/17);  new base A (3/3);  total (28/21)
Fisher's exact test for biased strand distribution p-value = 6.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.66e-01

GGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCG  >  NC_002947/444973‑445262
                                                                                                                                              |                                                                                                                                                   
ggTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGc                                                                                                                                               <  5:194308/149‑1 (MQ=255)
          gCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCgg                                                                                                                                     <  6:83789/149‑1 (MQ=18)
               cgacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGTATGCGTCCGATCAGACAACAATTTTGTCTGGt                                                                                                                                                    >  8:25324/1‑129 (MQ=255)
               cgacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGTATGCGTCCGATCAGACAACAATTTTGTCTGGt                                                                                                                                                    <  7:25324/129‑1 (MQ=255)
                 acgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGGATTCCCGCGAATGCGGCCGAAGAGCCAAAAAATTTTTATGGTGGGGGCTCGTAGCGGGGCAGcc                                                                                                                              >  5:226943/1‑149 (MQ=255)
                         cTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCgg                                                                                                                                     <  1:283880/134‑1 (MQ=17)
                         cTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCgg                                                                                                                                     >  2:283880/1‑134 (MQ=17)
                                 gATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGCATGCGTCCGATCAGACAACAATTTTGTGTGGTCGGGCCTCTTCGCGGGCAAGCCCGCGCCTAAAAggggt                                                                                                              >  3:322540/1‑147 (MQ=255)
                                   tcatcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTTCCCGCGAATGCGTCCGATAAGACAACAATTTTTTCTGGTCGGGCCTCTTAGCGGGCAATCCCGCTCCGACAACGGTTtg                                                                                                            >  6:101027/1‑149 (MQ=255)
                                         acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGTTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcat                                                                                                      >  5:88123/1‑149 (MQ=255)
                                                       aTACTTGCGTCATCCCTTATTTCTGCGCCTGCCTTGTTGGTGGGGGCTTGCCGGCTATTGCGTCCTATCACAAAAAATTTTTGTCTGGTCGGGCCTCTTCGCGGGAAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGAttt                                                                                        <  2:341892/149‑1 (MQ=255)
                                                           ttGCGTCATCCACTATTTCAGCGCCTGCCTTGTAGGAGCGGGCATGCCCGCGAATGAGTCCCATAACACAACAAAATTTTCTGGTGGGGCCTCGTACCGGGCAAGCCAGGGCCTACAAGCGTTTGAGGCATTGCATGCCAGCTTTggc                                                                                     >  2:263719/1‑146 (MQ=255)
                                                                  aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGTTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCg                                                                             <  6:88123/149‑1 (MQ=255)
                                                                    ccccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTTCCCGCGAATTCGTCCCATAAGACAACAATTTTTTATGGTCGGGCCACTTAGCGGGCCAGCCCCCTCCGAAAAGGGTTTTTGGCATGGCAAGTCTGATTTTGCATTTTTAGTg                                                                           >  2:32186/1‑149 (MQ=255)
                                                                            tCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTcg                                                                                                                                        >  4:278652/1‑80 (MQ=255)
                                                                            tCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTcg                                                                                                                                        <  3:278652/80‑1 (MQ=255)
                                                                                 ccctgcctTGTTGCTTCGGGCTTGCCCGCGAATGCGTCCGATCATCAAACAATTTTGGCTGGTCGGGACTCTTCGCGGGCATGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa                                                               <  1:263719/147‑1 (MQ=255)
                                                                                               cgCGGGCTGCCCCGCTAAGGCGTCCGATCCCACAAAAATTTTGTCTGGCGGGGCCTCTCCGCGGGAAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt                                                <  6:226943/148‑1 (MQ=255)
                                                                                                 cGGGTTTGCCCGCTAATGCGGCCGATCACAAAACAATTTTGTCGGGGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                              <  8:27770/149‑1 (MQ=255)
                                                                                                        gCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGt                                                        >  6:347114/1‑132 (MQ=255)
                                                                                                        gCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGt                                                        <  5:347114/132‑1 (MQ=255)
                                                                                                         cccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCTTAAATGTCACCATAGTCCATCCTTGACAGAAAGc                                      >  2:174557/1‑149 (MQ=255)
                                                                                                         cccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAg                                       <  1:47634/148‑1 (MQ=255)
                                                                                                         cccGCGAAGAGGCCCGACCAGACAAAATTGTTGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGc                                      >  5:39090/1‑149 (MQ=18)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCt                                                 >  6:327631/1‑137 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCt                                                 <  5:327631/137‑1 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                              <  7:350400/140‑1 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                              >  8:350400/1‑140 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt                                     >  4:21296/1‑149 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt                                     >  4:178987/1‑149 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt                                     >  5:275895/1‑149 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt                                     >  5:134588/1‑149 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt                                     >  1:229380/1‑149 (MQ=255)
                                                                                                          ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTACTACAAGGGTTTGTGGCATGGCATGACTGATTTGCAATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAgaa                                     >  4:230645/1‑147 (MQ=255)
                                                                                                            gctaaTGCGTCCGATCAGACAACAATTTTGTCTGGGCGGGCCTATTCGCGGGAAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa                                   <  1:221988/146‑1 (MQ=255)
                                                                                                            gcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCa                                                     <  5:423140/131‑1 (MQ=255)
                                                                                                            gcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCa                                                     >  6:423140/1‑131 (MQ=255)
                                                                                                            gcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt                                     >  2:106113/1‑147 (MQ=255)
                                                                                                                           cacacaaaaTTTTTGTTTGGCCGGGCCTCTCCGGGGGAATGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGttt                    <  2:365036/146‑1 (MQ=255)
                                                                                                                             gACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTc                   >  1:403752/1‑148 (MQ=255)
                                                                                                                               caacaaTTTTTTCTGTTCGGGCCTCTTCGCGTGCAAGGCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa                <  3:230645/149‑1 (MQ=255)
                                                                                                                                aacaaTTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa                >  2:33581/1‑148 (MQ=255)
                                                                                                                                aacaaTTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa                >  2:27288/1‑148 (MQ=255)
                                                                                                                                aacaaTTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGAATTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa                >  1:101088/1‑148 (MQ=255)
                                                                                                                                  caaTTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAggg                                                                                                                <  5:379266/50‑1 (MQ=255)
                                                                                                                                  caaTTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAggg                                                                                                                >  6:379266/1‑50 (MQ=255)
                                                                                                                                  caaTTTTGTCTGGTCGGGCCGCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaacaa             <  5:101027/149‑1 (MQ=255)
                                                                                                                                  aattgttGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                              <  4:179480/111‑1 (MQ=25)
                                                                                                                                  aattgttGTCTGATCGGACGCATTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                              >  3:179480/6‑116 (MQ=25)
                                                                                                                                       ttgtcttgtcGGGCATCTTCGCTGTCAATCCCTCTCCTACAAGTGTTTGTGGCATTTCATGACTGATTTGCCATTTTTCGTGGCGTAAATTGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGt         <  1:174557/148‑1 (MQ=255)
                                                                                                                                             tgTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCg  <  1:296435/148‑1 (MQ=255)
                                                                                                                                              gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGNTAAACGTAAGTTTCAAACAACTGTTTGATc   <  1:32186/147‑1 (MQ=255)
                                                                                                                                              gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAGTTGTTTGaaa   <  6:134588/147‑3 (MQ=255)
                                                                                                                                              gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGAt    <  4:322540/146‑1 (MQ=255)
                                                                                                                                              gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATc   <  2:229380/147‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                   
GGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCG  >  NC_002947/444973‑445262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: