Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,673,549 | G→C | 11.1% | P107P (CCG→CCC) | PP_4137 → | outer membrane siderophore receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,673,549 | 0 | G | C | 11.1% | 150.4 / 10.1 | 54 | P107P (CCG→CCC) | PP_4137 | outer membrane siderophore receptor |
Reads supporting (aligned to +/- strand): ref base G (26/22); new base C (2/4); total (28/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.13e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.97e-01 |
GTGGACATGCAGCGCGTGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATGGCTTTGACCAAGGCTCCCT > NC_002947/4673409‑4673695 | gtggACATGCAGCGCGTGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCa > 8:199748/1‑149 (MQ=255) gtggACATGCAGCGCGTGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCa > 6:376283/1‑149 (MQ=255) gACATGCAGCGCTTGGGGCAAGGACGAGTGGCCAGCAACCAGGACGTGCTGGACTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCCCCGG‑CGCACgg < 4:325340/149‑1 (MQ=255) gACATGCAGCGCGTGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCCCCGG‑CGCACgg < 1:11594/149‑1 (MQ=255) tGCAGCGCGTGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCCCCGG‑CGCACGGttga < 2:54417/149‑3 (MQ=255) aGCGCGTGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGgt < 7:199748/149‑1 (MQ=255) tGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTac < 1:298804/149‑1 (MQ=255) ggCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTACCGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTacac > 5:297464/1‑148 (MQ=255) ccAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGtt < 1:387740/120‑1 (MQ=255) ccAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGtt > 2:387740/1‑120 (MQ=255) cAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGc > 1:149771/1‑149 (MQ=255) cAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCCCCGG‑CGCACGGtt < 8:206131/119‑1 (MQ=255) cAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCCCCGG‑CGCACGGtt > 7:206131/1‑119 (MQ=255) aCCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATCCGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTg < 8:74531/149‑1 (MQ=255) aCCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGtt > 4:300046/1‑148 (MQ=255) aGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGt > 1:206539/1‑144 (MQ=255) cGTGCTGGCCTACCAGCCAGGGGTGGTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGGTCGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGc < 1:308500/149‑1 (MQ=255) cTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCggg > 2:73693/1‑149 (MQ=255) cTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCa > 1:410904/1‑149 (MQ=255) tACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCAc > 5:262771/1‑149 (MQ=255) aCCAGCCAGGTGTGTTCGCCCAATCGGCATGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGt < 6:62615/95‑1 (MQ=255) aCCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGAATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGt > 5:62615/1‑95 (MQ=255) gccagGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCt > 6:33964/1‑148 (MQ=255) cccagGGGGGTTCGCCCAAGCGGCAGGTAACGTGGCCATCCAGCTGCCTAAACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCtt < 2:149771/148‑1 (MQ=255) ccagGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTa < 1:73693/149‑1 (MQ=255) cagGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTAc < 3:300046/149‑1 (MQ=255) tgtTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGGCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTg < 5:376283/149‑1 (MQ=255) gCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCg > 3:281023/1‑148 (MQ=255) ccAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAAc < 7:1628/149‑1 (MQ=255) ggCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCtg < 7:81293/148‑1 (MQ=255) gTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTAc < 3:39719/125‑1 (MQ=255) gTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTAc > 4:39719/1‑125 (MQ=255) gATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGggcgg > 5:416183/1‑110 (MQ=255) gATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGggcgg < 6:416183/110‑1 (MQ=255) tGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTg > 5:64172/1‑149 (MQ=255) cATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGcc > 5:155097/1‑148 (MQ=255) aTCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGa < 8:177214/125‑1 (MQ=255) aTCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGa > 7:177214/1‑125 (MQ=255) gTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACCCCATGTTCGCCGGCCTGCCGTTGCCCGGCCCggg > 5:22967/1‑93 (MQ=255) gTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGCCCGGCCCggg > 5:29008/1‑93 (MQ=255) gTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGtgctgc > 5:271432/1‑149 (MQ=255) gATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGt < 5:33964/148‑1 (MQ=255) aTACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCtgt < 2:276402/121‑1 (MQ=255) aTACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCtgt > 1:276402/1‑121 (MQ=255) tACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGgc < 6:155097/149‑1 (MQ=255) gcgGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGgcgc > 4:9979/1‑148 (MQ=255) gggCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATGGc < 6:297464/148‑1 (MQ=255) accggaaCCGTGCGCCCCCGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATGGCttt > 6:166692/6‑149 (MQ=255) cTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATGGCTTTGa > 8:351736/1‑149 (MQ=255) aCCGTGCGCCGGGGG‑CGGACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATTGCTTTGACCaa < 2:286557/149‑1 (MQ=255) gTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAAc > 3:324095/1‑93 (MQ=255) gTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAAc < 4:324095/93‑1 (MQ=255) ccGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATGGCTTTGACCAAGGCTCCCt < 8:329573/149‑1 (MQ=255) ccGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATGGCTTTGACCAAGGCTCCCt > 3:246652/1‑149 (MQ=255) | GTGGACATGCAGCGCGTGGGGCAAGGCCGAGTGGCCAGCAACCAGGACGTGCTGGCCTACCAGCCAGGGGTGTTCGCCCAATCGGCAGGTAACGATGGCATCAAGCTGTCGATACGCGGCTCGGGCCTCAACCGTGCGCCGGGGG‑CGCACGGTTCCGGTGTCTACACCATGTTCGACGGCCTGCCGTTGACCGGCCCGGGCGGCACGCCTTACGAACTGTTCGAACCGCTGTGGCTGAGCCGTGCCGAAGTGCTGCGTGGCGCCAATGGCTTTGACCAAGGCTCCCT > NC_002947/4673409‑4673695 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |