| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 471,067 | G→A | 10.8% | intergenic (‑111/+17) | PP_0386 ← / ← rpoD | sensory box protein/RNA polymerase sigma 70 factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 471,067 | 0 | G | A | 10.8% | 275.8 / 18.3 | 103 | intergenic (‑111/+17) | PP_0386/rpoD | sensory box protein/RNA polymerase sigma 70 factor |
| Reads supporting (aligned to +/- strand): ref base G (50/41); new base A (8/3); total (59/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.21e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
TCAGGATCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGGTG > NC_002947/470920‑471213 | tCAGGATCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑gg < 3:360476/149‑1 (MQ=255) ggATCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGcc < 5:357667/149‑1 (MQ=255) gATCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCg > 5:287708/1‑149 (MQ=255) aGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGTCCT‑‑GGGCCggg < 5:325880/147‑1 (MQ=255) cAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGttt > 3:334688/1‑149 (MQ=255) aaCAGAATGTCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGTTGTGCAACTGAAGGCGGGCTTTATGTCACTGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGtttt < 1:38995/149‑1 (MQ=255) aaCAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGtttt < 2:187217/149‑1 (MQ=255) actgAATGGCCGGCTTCAAGGAGATGGCAGCGTCGCACTCAGGTGGTCTGAAGTCGTGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGtttt < 2:178630/145‑1 (MQ=255) aCAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTTGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGCGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTg < 3:158800/149‑1 (MQ=255) aCAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTg > 8:360000/1‑149 (MQ=255) aCAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTCCCGCAGGTGTGCAACGGAAGGCGGGCTTTATCTCACGTGCCACTAAAGAAAAACCCCGGCCT‑‑GGCCCGGGGtttt > 1:178630/1‑148 (MQ=255) aGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGt > 7:19160/1‑143 (MQ=255) aGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGt < 8:19160/143‑1 (MQ=255) aGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGtc < 3:155867/149‑1 (MQ=255) gAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCC‑‑AGGCCGGGGtttttctt < 8:34437/149‑5 (MQ=255) aaTGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGtcat > 6:209039/1‑149 (MQ=255) aaTGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCC‑‑AGGCCGGGGtttttctt > 4:1218/1‑144 (MQ=255) aTGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCC‑‑AGGCCGGGGtttttcttta < 3:1218/149‑7 (MQ=255) gCCGGCTTCAAGGACATGGCAGCCTAGCACTAAGGTGGTCTTAAGTCGAGTGTAGACGGGCATTGCCGAAGGTGTGCAACTGAAGGCGGGCTTTATGTCCCGGGCCACTAAAGAAAAACACCGGCCT‑‑GGGCCGGGGTTTTGTCATCAc > 4:188222/1‑148 (MQ=255) ccGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACtc > 4:51114/1‑149 (MQ=255) tCAAGGACATGGCAGCCTCGCAGTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGag > 7:62495/1‑149 (MQ=255) tCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGag > 2:72717/1‑149 (MQ=255) cAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGag < 7:360000/148‑1 (MQ=255) aGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGaggaa < 5:209039/149‑1 (MQ=255) aGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGagg > 1:152380/1‑147 (MQ=255) ggACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACTGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGaggaag > 2:101790/1‑149 (MQ=255) cATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAg > 5:326535/1‑149 (MQ=255) aTGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAgc > 2:270527/1‑149 (MQ=255) ggCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAgcg > 4:43693/1‑148 (MQ=255) cACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGc > 2:31553/1‑149 (MQ=255) aGGTGGTCTGAAGTCGAGTGTAGACTGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGc < 3:43693/147‑1 (MQ=255) aGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATTTCACGGGCCACTAAAGAAAAACCCCGGCCTCCGGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTg < 1:101790/148‑1 (MQ=255) aGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGACGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGc > 5:210233/1‑147 (MQ=255) tggtCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTc < 3:51114/149‑1 (MQ=255) gtCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCgg > 1:52618/1‑149 (MQ=255) gtCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCgg < 1:31553/149‑1 (MQ=255) tGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTc < 4:303490/134‑1 (MQ=255) tGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTc > 3:303490/1‑134 (MQ=255) tGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGCCGGGCTTTATGTCACGGGCCAATAAAGAAAAACCACGGCCA‑‑CGGCCGGGGTTTTCTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTccc > 3:14807/1‑134 (MQ=255) gTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGGCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGgcgc > 6:343925/1‑149 (MQ=255) tCGAGTGTAGACGGGCATTTCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCa < 1:102990/149‑1 (MQ=255) cGAGTGTAGAGGGGCATTGCCGCAGGTGTGCATGGGTAGGCGGGCTTTATGTCTCGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCGGGGGTTTTGTCATCAGTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCa < 2:355902/148‑1 (MQ=255) gAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGc > 5:123452/1‑149 (MQ=255) gtgtAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGa < 6:218821/106‑1 (MQ=255) gtgtAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGa > 5:218821/1‑106 (MQ=255) cGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAAc < 4:334688/149‑1 (MQ=255) cGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAAc < 1:162090/149‑1 (MQ=255) aTTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCctt < 1:72717/149‑1 (MQ=255) ccGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGt > 2:337972/1‑72 (MQ=255) cGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCcttcgctt < 2:152380/149‑1 (MQ=255) gCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCcttcgcttc > 4:201205/1‑149 (MQ=255) gtgtGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATc > 1:130832/1‑149 (MQ=255) tgtgCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCt < 6:123452/149‑1 (MQ=255) aaCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCt < 8:263614/144‑1 (MQ=255) aaCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCt > 7:263614/1‑144 (MQ=255) aaCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACg > 4:226639/1‑148 (MQ=255) aCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGa < 3:313091/77‑1 (MQ=255) aCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGa > 4:313091/1‑77 (MQ=255) cGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGAt > 4:147057/1‑149 (MQ=255) ggAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATc > 6:5701/1‑149 (MQ=255) gCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCt > 6:232724/1‑148 (MQ=255) gCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCt > 5:374003/1‑148 (MQ=255) ggCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGCCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGAAGGTGCTCGCTGCGAGTAGGCTGGCGCAGATTGCGCAACGCAATCGATTCGATCTGACGGATCCGCTCAcg > 4:359766/1‑149 (MQ=255) gCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAcgc < 3:201205/149‑1 (MQ=255) tttATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGc > 5:50144/1‑141 (MQ=255) tttATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGt > 6:283484/1‑149 (MQ=255) tATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTa > 2:260071/1‑149 (MQ=255) tCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTc < 6:287708/149‑1 (MQ=255) cACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGCGCTCGCCGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTc > 5:37628/1‑148 (MQ=255) gggCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAcgc < 3:405962/137‑1 (MQ=255) gggCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAcgc > 4:405962/1‑137 (MQ=255) aCTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCtt < 3:226639/149‑1 (MQ=255) tAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGAc < 1:146434/116‑1 (MQ=255) tAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGAc > 2:146434/1‑116 (MQ=255) tAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGc > 2:69039/1‑149 (MQ=255) tAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGc > 8:249090/1‑149 (MQ=255) aaGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGccc < 5:283484/149‑1 (MQ=255) aaGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGcc > 3:323730/1‑148 (MQ=255) aaGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGc < 2:130832/147‑1 (MQ=255) aaGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTCAAGGATCCGCTCACGCGTTAAGTCAAACTGCTTGcc > 7:366033/1‑148 (MQ=255) caaaaCCCCGGCCC‑‑AGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCGTCGATCTGACGGATCCGCTCACGCGGTACGTCAAACTGCTTGCCCAcc > 3:124442/2‑149 (MQ=255) aaaaaCCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTGGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCAcc > 4:91031/1‑149 (MQ=255) aaaaCCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCtt > 7:5673/1‑141 (MQ=255) aaaaCCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCtt < 8:5673/141‑1 (MQ=255) aaaaCCCCGGCCC‑‑AGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCAcc > 6:374895/1‑148 (MQ=255) aaaaCCCCGGCCC‑‑AGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACct > 7:104244/1‑149 (MQ=255) aaaaCCCCGGCCC‑‑AGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACct > 7:111944/1‑149 (MQ=255) aaaaCCCCGGCCC‑‑AGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACct > 3:349066/1‑149 (MQ=255) aCCCCGGCCC‑‑AGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCtt > 6:352651/1‑149 (MQ=255) ccccGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGa > 6:134169/1‑105 (MQ=255) ccccGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGa < 5:134169/105‑1 (MQ=255) ccccGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTc > 4:187254/1‑149 (MQ=255) ccccGGCCC‑‑AGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTc > 4:239604/1‑149 (MQ=255) cGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAACCTGCTTGCCCACCTCTTCGAg > 7:73951/1‑149 (MQ=255) ggacT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGGCGGTTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAgg < 3:188222/146‑1 (MQ=255) ggCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAgg < 6:326535/149‑1 (MQ=255) ggCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAgg < 5:5701/149‑1 (MQ=255) ccT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGgt < 6:210233/149‑1 (MQ=255) gggCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGgtg > 2:104514/1‑147 (MQ=255) gggCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGgtg < 1:104514/147‑1 (MQ=255) | TCAGGATCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCT‑‑GGGCCGGGGTTTTGTCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCAGCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGGTG > NC_002947/470920‑471213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |