| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,789,896 | C→G | 5.1% | G1315A (GGA→GCA) | pvdI ← | non‑ribosomal peptide synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,789,896 | 0 | C | G | 5.1% | 259.2 / 4.0 | 78 | G1315A (GGA→GCA) | pvdI | non‑ribosomal peptide synthetase |
| Reads supporting (aligned to +/- strand): ref base C (36/38); new base G (2/2); total (38/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
ATGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCATAGT > NC_002947/4789752‑4790043 | aTGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGcc > 5:381880/1‑149 (MQ=255) ttGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGcccc < 6:245511/148‑1 (MQ=255) ttGATCTTCTCGTTACCGCTGTAGCGCGCCAGCAGCAGGCCGAAGGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGcccc < 4:125379/148‑1 (MQ=255) gATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑a > 2:364564/1‑148 (MQ=255) ttctCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCt > 8:385079/1‑149 (MQ=255) ctcGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑a > 4:109493/1‑142 (MQ=255) ctcGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑a < 3:109493/142‑1 (MQ=255) ctcGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAg < 1:154980/145‑1 (MQ=255) gTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTg < 3:344991/147‑1 (MQ=255) gTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGc < 8:344114/148‑1 (MQ=255) gTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCa < 2:383352/149‑1 (MQ=255) ttGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCTGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAg > 2:54691/1‑149 (MQ=255) cGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCTACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGc > 1:336682/1‑138 (MQ=255) cGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGc < 2:336682/138‑1 (MQ=255) gcgcgcCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGt < 7:78191/148‑1 (MQ=255) gcgcCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑ggg > 6:91857/1‑149 (MQ=255) cagcagcagGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGt > 6:218152/1‑149 (MQ=255) gcagcagGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCg > 1:408702/1‑149 (MQ=255) gcagGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCa < 3:394056/149‑1 (MQ=255) gcagGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCa < 1:364564/149‑1 (MQ=255) cagGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAg < 6:152506/149‑1 (MQ=255) ggCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGt < 6:381880/149‑1 (MQ=255) gCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGCATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAg < 1:61146/147‑1 (MQ=255) gCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAg > 2:61146/1‑146 (MQ=255) ccGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGAACTGCCAGGCGCCGCAGGTCCGCCGTCTACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGAAGCTAGGGCCGT‑GGCCGTTCgcaagtta > 2:86843/1‑141 (MQ=255) cGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAAc < 4:269855/149‑1 (MQ=255) gAACGGGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACt > 1:366735/1‑149 (MQ=255) cGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTgca < 5:15370/149‑1 (MQ=255) ggAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCg < 7:385079/149‑1 (MQ=255) gACGTGGTACTGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAAGTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCTGCTCGGGCCGT‑GGGGGGTGGGCAGGTTACTGCAGGAATGCGaaa < 1:365204/148‑1 (MQ=255) aCGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAat > 4:263369/1‑148 (MQ=255) gTGGAACAGCGTGGTGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAatcat > 8:336946/1‑149 (MQ=255) gTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAg < 3:99248/125‑1 (MQ=255) gTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAg > 4:99248/1‑125 (MQ=255) gTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTACAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAatca > 8:76491/1‑148 (MQ=255) tGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAatcatc < 5:108473/149‑1 (MQ=255) ggAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGaaa < 5:35331/143‑1 (MQ=255) ggAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGaaa > 6:35331/1‑143 (MQ=255) ggAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCt > 5:403148/1‑149 (MQ=255) ggAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCt > 3:394093/1‑149 (MQ=255) cAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTc > 2:146483/1‑147 (MQ=255) cAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTc > 5:92338/1‑147 (MQ=255) cGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGt < 7:76491/149‑1 (MQ=255) gCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTgcgc > 7:81313/1‑149 (MQ=255) gTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCt < 3:263369/149‑1 (MQ=255) ttGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTg > 4:396148/1‑149 (MQ=255) ttGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTg > 8:277467/1‑149 (MQ=255) gCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGc < 2:366735/148‑1 (MQ=255) gCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGc < 5:91857/148‑1 (MQ=255) cAGCGCACTGCCAGGCGCCGCTGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGcc < 1:54691/148‑1 (MQ=255) cAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGTGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTAGATGGGGTCGCCGTGGGGCGGTCGGCAGGTATCAGCAGCACAGCGAAATCATCTTCCAGGTGCGCCTccc > 1:337577/1‑149 (MQ=255) cAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GAGCGGTCGGCAGGTAACTgcagc < 8:192735/117‑1 (MQ=255) cAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GAGCGGTCGGCAGGTAACTgcagc > 7:192735/1‑117 (MQ=255) tGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGcc > 4:35986/1‑147 (MQ=255) gccgcAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCt < 1:146483/149‑1 (MQ=255) gTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GAGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCt > 8:31406/1‑149 (MQ=255) tCCGGCGTGAACTGCGGGGGCAGGCGCACGTCCATACGTCCGCCCCG‑ATATCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTg < 1:86843/149‑1 (MQ=255) cgccgTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGc < 2:223385/142‑1 (MQ=255) cgccgTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGc > 1:223385/1‑142 (MQ=255) cgTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTgc > 5:260955/1‑85 (MQ=255) cgTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTgc < 6:260955/85‑1 (MQ=255) cgcgGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAg < 2:408702/147‑1 (MQ=255) ggggCGGACGTCTGGACGTGCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTc > 4:224598/3‑135 (MQ=255) ggggCGGACGTCTGGACGTGCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTc < 3:224598/133‑1 (MQ=255) gggCGGACGTCTGGACGTGCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCtt < 4:315640/120‑1 (MQ=255) gggCGGACGTCTGGACGTGCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCtt > 3:315640/2‑121 (MQ=255) ggCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGt < 3:35986/149‑1 (MQ=255) gcACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGc > 3:22725/1‑149 (MQ=255) aCGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAg < 7:115525/107‑1 (MQ=255) aCGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAg > 8:115525/1‑107 (MQ=255) cAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTg < 7:336946/148‑1 (MQ=255) cAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACAGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGCGGCTCGCGTTGCCAGCTgg > 3:108340/1‑149 (MQ=255) aGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTgg > 8:304457/1‑148 (MQ=255) aGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCCgg > 4:408249/1‑148 (MQ=255) gACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAg > 2:346207/1‑127 (MQ=255) gACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCa < 5:218152/149‑1 (MQ=255) tCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCATAGt < 7:304457/149‑1 (MQ=255) tCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCATAGt < 8:81313/149‑1 (MQ=255) | ATGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCG‑ATAGCTTTGCAGCTCGGGCCGT‑GGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCATAGT > NC_002947/4789752‑4790043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |