Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,837,489 | G→A | 8.4% | A20T (GCC→ACC) | ccoO‑I → | cbb3‑type cytochrome c oxidase subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,837,489 | 0 | G | A | 8.4% | 164.5 / 4.2 | 59 | A20T (GCC→ACC) | ccoO‑I | cbb3‑type cytochrome c oxidase subunit |
Reads supporting (aligned to +/- strand): ref base G (29/25); new base A (2/3); total (31/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.51e-01 |
GCCTGGAACACCTGGCGCACCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTGGGCTGTC > NC_002947/4837347‑4837633 | gCCTGGAACACCTGGCGCACCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGt > 7:336248/1‑147 (MQ=255) gAACACCTGGCGCACCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGACGGCAAATACCATCAGCagg < 6:265786/149‑3 (MQ=255) acacCTGGCGCACCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATcgg > 6:375155/1‑149 (MQ=255) cTGGCGCACCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCggcggc < 8:336248/149‑1 (MQ=255) cTGGCGCACCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCggcggc > 8:274733/1‑149 (MQ=255) aCCGTGCGTTCGCCAGCGCTTGACGTCGGCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTg > 1:232536/1‑125 (MQ=255) aCCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTg < 2:232536/125‑1 (MQ=255) gTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGt < 5:296628/149‑1 (MQ=255) gTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGt > 4:68549/1‑149 (MQ=255) cAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCt > 7:166298/1‑149 (MQ=255) ttGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGttctt > 6:66197/1‑149 (MQ=255) gACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGttcttc < 5:66197/148‑1 (MQ=255) gACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGttcttc > 4:188260/1‑148 (MQ=255) gTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAg > 5:280419/1‑148 (MQ=255) ccccTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCa > 3:123832/1‑103 (MQ=255) ccccTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCa < 4:123832/103‑1 (MQ=255) ccccTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTACCGTCAGCATCGGCGGCCTGACCCAGATc < 3:7253/126‑1 (MQ=255) ccccTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTACCGTCAGCATCGGCGGCCTGACCCAGATc > 4:7253/1‑126 (MQ=255) cccTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCAACGGCGGCCTGACCCAGATCGTCCCGCTCTTCTTCCAGGa > 4:376813/1‑145 (MQ=255) cccTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGACAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGa < 3:376813/145‑1 (MQ=255) cTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGACGGCAAATACCATCAGCa < 7:373333/103‑1 (MQ=255) cTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGACGGCAAATACCATCAGCa > 8:373333/1‑103 (MQ=255) ccAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTg > 4:216689/1‑122 (MQ=255) ccAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTg < 3:216689/122‑1 (MQ=255) ccAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCg < 6:280419/149‑1 (MQ=255) gTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTc < 6:282484/149‑1 (MQ=255) tGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCg > 2:227192/1‑148 (MQ=255) ttGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCa > 1:266141/1‑121 (MQ=255) ttGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCa < 2:266141/121‑1 (MQ=255) ttGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAgg > 5:177888/1‑148 (MQ=255) gaAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGc < 7:274733/149‑1 (MQ=255) gaAACATGAAGTCATCGAGAAAAACCTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCgcgc > 3:2795/1‑149 (MQ=255) aaaCATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCa < 5:157289/109‑1 (MQ=255) aaaCATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCa > 6:157289/1‑109 (MQ=255) aCATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTg > 4:210342/1‑148 (MQ=255) cATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGc > 3:129324/1‑148 (MQ=255) gTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTgg > 6:320885/1‑148 (MQ=255) aTCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTgg > 4:279657/1‑145 (MQ=255) aTCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTgg < 3:279657/145‑1 (MQ=255) gagaAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGcc < 5:320885/148‑1 (MQ=255) gagaAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCcg > 8:244117/1‑149 (MQ=255) gagaAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCcg > 6:184376/1‑149 (MQ=255) gagaAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTAAGCATCCGCGCCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGACGAAGCCATGAAGCCCTACAACTCGCTGCAACTGGAACGCcg > 7:65235/1‑149 (MQ=25) aaaaCGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGAt < 7:244117/149‑1 (MQ=255) aaaaCGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGAt < 6:177888/149‑1 (MQ=255) aaaCGTCGGCCTGATGGCCCTGCTGATGGTATTAGCCGTCAGCATCCGCGGCCTGACACAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACAGCGCTGCAACTGGAAGGCCGAGATg > 1:263373/1‑149 (MQ=25) cGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCTGCCTGACCCAGATCTTCCCGCTGTTCTTCCAGGACGTCACCAACAATCCGGTCGAAGGCATGAAGCCCTACACGGCGCTGCAACTGGTAGGCCGGGATGTCt < 2:263373/149‑1 (MQ=25) cGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTc > 6:368191/1‑148 (MQ=255) gCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGCCCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATc > 7:82817/1‑149 (MQ=255) tGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGaa < 5:184376/149‑1 (MQ=255) tGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGaa < 3:210342/149‑1 (MQ=255) tGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCGGTTCTTCCATTACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGaa < 8:166298/149‑1 (MQ=255) ccTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACAt < 4:117829/138‑1 (MQ=255) ccTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACAt > 3:117829/1‑138 (MQ=255) ctgctgATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTg > 5:397193/1‑149 (MQ=255) aTGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTggg < 3:188260/149‑1 (MQ=255) ggTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCTCCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTGGGc < 8:65235/148‑1 (MQ=255) aTTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTGGGCTGt < 8:82817/148‑1 (MQ=255) tttGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTGGGCTGTc < 3:68549/148‑1 (MQ=255) tGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTg < 6:385846/139‑1 (MQ=255) tGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTg > 5:385846/1‑139 (MQ=255) | GCCTGGAACACCTGGCGCACCGTGCGTTCGCCAGCGCTTGACGTCGCCCCTGCGAACGCCCAGTTGGCTTGAGGAGAAACGCCTGATGAAACATGAAGTCATCGAGAAAAACGTCGGCCTGATGGCCCTGCTGATGGTATTTGCCGTCAGCATCGGCGGCCTGACCCAGATCGTCCCGCTGTTCTTCCAGGACGTCACCAACAAACCGGTCGAAGGCATGAAGCCCTACACCGCGCTGCAACTGGAAGGCCGCGATGTCTACATCCGCGAAGGTTGCGTGGGCTGTC > NC_002947/4837347‑4837633 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |